Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_K14
         (364 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20056| Best HMM Match : zf-C3HC4 (HMM E-Value=9e-11)                31   0.28 
SB_26835| Best HMM Match : TGF_beta (HMM E-Value=7.3e-33)              27   6.0  

>SB_20056| Best HMM Match : zf-C3HC4 (HMM E-Value=9e-11)
          Length = 471

 Score = 31.1 bits (67), Expect = 0.28
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 100 KHCVNCGFNLTEX*NRVDALLC 165
           K+C  CGF +TE  N V+ LLC
Sbjct: 53  KNCKKCGFKITEESNSVNILLC 74


>SB_26835| Best HMM Match : TGF_beta (HMM E-Value=7.3e-33)
          Length = 657

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 132 RXLKPCRCSPVLFLDDLLIVYEDEENI 212
           R L PC C+P    D  L+ Y+ +EN+
Sbjct: 616 RELSPC-CAPTKMFDLSLLYYDKDENL 641


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,659,075
Number of Sequences: 59808
Number of extensions: 81816
Number of successful extensions: 117
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 570200590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)