Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_K11
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    29   0.45 
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   9.6  
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    25   9.6  

>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1008

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
 Frame = +2

Query: 188  DRNTSALVVKSPRRKFYGLFQIGSEWCKE-GRKGGKCDIPCEALLDEDIKDDGVCAIKIF 364
            +R   ALV+  P    +G F++ S +     R+  K + P +  + +D  D        F
Sbjct: 768  ERLGRALVINIPWA-VWGFFKLISPFIDPITREKLKFNEPLDRYVPKDQLDSNFGGSLHF 826

Query: 365  EQEGFKYWPKWEVRCKGQTLPDIEK 439
            E    KYWP+    CK + L  +EK
Sbjct: 827  EYHHEKYWPQLVELCKSRRLGILEK 851


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2310

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = -1

Query: 138 KLFFNKSLVNLHLVYTLHCVFARYNDNTINVNKN 37
           KL+  K L+++H+   +   +++ ++N I V KN
Sbjct: 839 KLYTRKDLISIHISLAMCYWWSKDHENAIKVLKN 872


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 7/63 (11%)
 Frame = +2

Query: 266 CKEGRKGGKCDIPCEALLDEDIKDDGVCAI------KIFEQEGFK-YWPKWEVRCKGQTL 424
           C   +KG KC       LD     +  C+I      K+  ++  K + PK    C G+  
Sbjct: 61  CNSRKKGSKCSTSSTTDLDSSSASNSSCSIPSSISEKLLPRDNVKTHCPKRSASCCGKK- 119

Query: 425 PDI 433
           PD+
Sbjct: 120 PDV 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,410,677
Number of Sequences: 5004
Number of extensions: 46034
Number of successful extensions: 114
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)