Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_K11
         (657 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50198| Best HMM Match : Frizzled (HMM E-Value=0)                    31   1.1  
SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   2.5  
SB_39138| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   4.4  
SB_55596| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-05)                 25   6.8  
SB_23566| Best HMM Match : 7tm_1 (HMM E-Value=0.00015)                 25   6.9  
SB_3091| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.7  

>SB_50198| Best HMM Match : Frizzled (HMM E-Value=0)
          Length = 654

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 115 RQFTSSVYLALCVREI*R*YY*CKQKCASARHCCT 11
           R F  SV++ +C +E+    Y C+  C SAR  C+
Sbjct: 82  RFFLCSVFVPMCTKEVNVPIYACRSMCESARDGCS 116


>SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 530

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 20  MASGRAFLFTLIVLSLYLANTQCKVYTRCKLTRDLLKN 133
           +A+ R  +F   VL+LY+    C +Y+  K  R  +KN
Sbjct: 160 LANPRILVFFSAVLALYIRFALCSIYSTTKNARSRIKN 197


>SB_39138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 624

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +2

Query: 182 GSDRNTSALVVKSPRRKFYGLFQIGSEWCKEGRKGGKCDIPCEALLDEDIK 334
           GS  N   L+V+  + + + L  +   W KEG   G+ DIP   L  +D K
Sbjct: 309 GSKINHLRLLVRELKSEIH-LLTLSETWIKEGASDGEFDIPGYRLFRKDRK 358


>SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4277

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +3

Query: 294 ATFLAKRYSTKT*KMMGCVQSRYSNRK 374
           A FLA+ ++ K  +M GC  +R++NRK
Sbjct: 852 APFLARLHNKKKGRMAGCWAARHNNRK 878


>SB_55596| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-05)
          Length = 412

 Score = 24.6 bits (51), Expect(2) = 6.8
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -2

Query: 503 ILGSACHAADWRGSVVAASLDTFQCRAEFGLC 408
           + GS  HA DW    V +  D F+      LC
Sbjct: 152 VQGSRIHAHDWFAKCVGSRGDAFRSYRRHKLC 183



 Score = 21.8 bits (44), Expect(2) = 6.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 338 HLLCLRRVTLRKECRIYHP 282
           H LCL+ +   +ECR+  P
Sbjct: 180 HKLCLQWLRHAQECRVNDP 198


>SB_23566| Best HMM Match : 7tm_1 (HMM E-Value=0.00015)
          Length = 356

 Score = 24.6 bits (51), Expect(2) = 6.9
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -2

Query: 503 ILGSACHAADWRGSVVAASLDTFQCRAEFGLC 408
           + GS  HA DW    V +  D F+      LC
Sbjct: 152 VQGSRIHAHDWFAKCVGSRGDAFRSYRRHKLC 183



 Score = 21.8 bits (44), Expect(2) = 6.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 338 HLLCLRRVTLRKECRIYHP 282
           H LCL+ +   +ECR+  P
Sbjct: 180 HKLCLQWLRHAQECRVNDP 198


>SB_3091| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
 Frame = +2

Query: 233 FYGLFQIGSEW-CKEGRKGGKCDIPCEALLD---EDIKDDGVCAIKIFEQEGFKYWPKWE 400
           FYGLF+  +E  CK  R G   DI  +A  +   +  K     A+KI+ QE F   P+W+
Sbjct: 38  FYGLFKQATEGPCKTSRPGF-WDIVGKAKWESWHQHGKMPQEKAMKIYVQELFSLDPEWD 96

Query: 401 VR 406
           ++
Sbjct: 97  IK 98


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,580,964
Number of Sequences: 59808
Number of extensions: 375493
Number of successful extensions: 929
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)