Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_K11
         (657 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.4  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    22   4.5  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    22   4.5  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    22   4.5  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    22   4.5  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   4.5  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    22   4.5  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   4.5  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   7.8  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 650 EYIY*LISTYINNKKVQTKNVTSPAIVN 567
           EY Y L   YI+ K ++ +N+ +  I+N
Sbjct: 769 EYDYELSRGYIDEKILENQNIITHMILN 796


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 473 SPPRDKRYLKSDNSYKLFR 529
           S  R+K+  K++NSY+ +R
Sbjct: 42  SREREKKSYKNENSYRKYR 60


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 473 SPPRDKRYLKSDNSYKLFR 529
           S  R+K+  K++NSY+ +R
Sbjct: 42  SREREKKSYKNENSYRKYR 60


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 473 SPPRDKRYLKSDNSYKLFR 529
           S  R+K+  K++NSY+ +R
Sbjct: 42  SREREKKSYKNENSYRKYR 60


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 473 SPPRDKRYLKSDNSYKLFR 529
           S  R+K+  K++NSY+ +R
Sbjct: 42  SREREKKSYKNENSYRKYR 60


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +2

Query: 449 WQLPPSRASPPRDKRYLKSDNSYKLF 526
           WQLP +  +PP    Y +   +  +F
Sbjct: 303 WQLPHNSTNPPNILLYYRDSLALSVF 328


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 473 SPPRDKRYLKSDNSYKLFR 529
           S  R+K+  K++NSY+ +R
Sbjct: 275 SREREKKSYKNENSYRKYR 293


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -1

Query: 102 LVYTLHCVFARYNDNTINVN 43
           L+   HCV    NDN  N N
Sbjct: 408 LIRNTHCVNNNQNDNIQNTN 427


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 403 DLPFRPILEAFLFEYLD 353
           DLP  P+ E F  +Y+D
Sbjct: 141 DLPVPPLTEVFPDKYMD 157


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,678
Number of Sequences: 438
Number of extensions: 3099
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)