Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_K10
(807 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 328 3e-90
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 322 2e-88
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 322 2e-88
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 322 2e-88
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 322 2e-88
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 320 9e-88
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 71 7e-13
At1g64880.1 68414.m07355 ribosomal protein S5 family protein con... 32 0.52
At3g18530.1 68416.m02357 expressed protein similar to unknown pr... 29 4.8
At3g01450.1 68416.m00069 expressed protein 29 4.8
At1g28210.2 68414.m03463 DNAJ heat shock protein, putative stron... 29 4.8
At1g28210.1 68414.m03462 DNAJ heat shock protein, putative stron... 29 4.8
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 6.3
At3g59580.1 68416.m06648 RWP-RK domain-containing protein simila... 28 6.3
At2g04050.1 68415.m00386 MATE efflux family protein similar to r... 28 8.4
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 328 bits (805), Expect = 3e-90
Identities = 147/211 (69%), Positives = 175/211 (82%)
Frame = +1
Query: 172 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 351
++++WVPVTKLGRLV+EGKI K+E IYL SLP+KE++IID +GPSL DEV+KIMPVQKQ
Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQIIDLLVGPSLKDEVMKIMPVQKQ 100
Query: 352 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 531
TRAGQRTRFKAF+ +GD+NGH+GLGVKCSKEVATAIRGAIILAKLSV+P+RRGYWGNKIG
Sbjct: 101 TRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVVPIRRGYWGNKIG 160
Query: 532 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPXKLLXMAGVQDCYTSXRGSTGTLGN 711
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VP K+L AG+ D +TS RGST TLGN
Sbjct: 161 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 220
Query: 712 FXXXXXXXXXXXXXXXXPDLWRDIPLTXSPY 804
F P+ W++ + SPY
Sbjct: 221 FVKATFDCLQKTYGFLTPEFWKETRFSKSPY 251
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 322 bits (790), Expect = 2e-88
Identities = 147/211 (69%), Positives = 171/211 (81%)
Frame = +1
Query: 172 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 351
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108
Query: 352 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 531
TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG
Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 168
Query: 532 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPXKLLXMAGVQDCYTSXRGSTGTLGN 711
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VP K+L AG+ D +TS RGST TLGN
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 228
Query: 712 FXXXXXXXXXXXXXXXXPDLWRDIPLTXSPY 804
F P+ W++ + SPY
Sbjct: 229 FVKATFDCLQKTYGFLTPEFWKETRFSRSPY 259
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 322 bits (790), Expect = 2e-88
Identities = 147/211 (69%), Positives = 171/211 (81%)
Frame = +1
Query: 172 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 351
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108
Query: 352 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 531
TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG
Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 168
Query: 532 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPXKLLXMAGVQDCYTSXRGSTGTLGN 711
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VP K+L AG+ D +TS RGST TLGN
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 228
Query: 712 FXXXXXXXXXXXXXXXXPDLWRDIPLTXSPY 804
F P+ W++ + SPY
Sbjct: 229 FVKATFDCLQKTYGFLTPEFWKETRFSRSPY 259
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 322 bits (790), Expect = 2e-88
Identities = 147/211 (69%), Positives = 171/211 (81%)
Frame = +1
Query: 172 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 351
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108
Query: 352 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 531
TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG
Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 168
Query: 532 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPXKLLXMAGVQDCYTSXRGSTGTLGN 711
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VP K+L AG+ D +TS RGST TLGN
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 228
Query: 712 FXXXXXXXXXXXXXXXXPDLWRDIPLTXSPY 804
F P+ W++ + SPY
Sbjct: 229 FVKATFDCLQKTYGFLTPEFWKETRFSRSPY 259
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 322 bits (790), Expect = 2e-88
Identities = 147/211 (69%), Positives = 171/211 (81%)
Frame = +1
Query: 172 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 351
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108
Query: 352 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 531
TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG
Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 168
Query: 532 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPXKLLXMAGVQDCYTSXRGSTGTLGN 711
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VP K+L AG+ D +TS RGST TLGN
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 228
Query: 712 FXXXXXXXXXXXXXXXXPDLWRDIPLTXSPY 804
F P+ W++ + SPY
Sbjct: 229 FVKATFDCLQKTYGFLTPEFWKETRFSRSPY 259
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 320 bits (785), Expect = 9e-88
Identities = 145/211 (68%), Positives = 171/211 (81%)
Frame = +1
Query: 172 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 351
++++WVPVTKLGRLV G I ++E IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ
Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQ 109
Query: 352 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG 531
TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG
Sbjct: 110 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 169
Query: 532 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPXKLLXMAGVQDCYTSXRGSTGTLGN 711
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VP K+L AG+ D +TS RGST TLGN
Sbjct: 170 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 229
Query: 712 FXXXXXXXXXXXXXXXXPDLWRDIPLTXSPY 804
F P+ W++ + SPY
Sbjct: 230 FVKATFDCLQKTYGFLTPEFWKETRFSRSPY 260
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 71.3 bits (167), Expect = 7e-13
Identities = 40/132 (30%), Positives = 70/132 (53%)
Frame = +1
Query: 316 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 495
+ V+++ V K + G++ +F+A V +GD G++G+G +KEV A++ + I A+ +++
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208
Query: 496 PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPXKLLXMAGVQDCY 675
V + K T P + G G+ V L PA GTG+++ +L MAGV++
Sbjct: 209 QV-------PMTKYSTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENAL 261
Query: 676 TSXRGSTGTLGN 711
GS L N
Sbjct: 262 GKQLGSNNALNN 273
>At1g64880.1 68414.m07355 ribosomal protein S5 family protein
contains similarity to 30S ribosomal protein S5
GI:6969105 from [Campylobacter jejuni]
Length = 515
Score = 31.9 bits (69), Expect = 0.52
Identities = 29/124 (23%), Positives = 54/124 (43%)
Frame = +1
Query: 322 VLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPV 501
V+ + V K T+ G+ R+ A + G+ G IG ++ +A++ A ++ V
Sbjct: 362 VIDVKKVCKVTKGGRVERYTALMVCGNYEGIIGYAKAKAETGQSAMQKAYEKCFQNLHYV 421
Query: 502 RRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPXKLLXMAGVQDCYTS 681
R + HT+ + + L PAP TG+ + V +L +AG ++ +
Sbjct: 422 ERH-------EEHTIAHAIQTSYKKTKLYLWPAPTTTGMKAGRVVKTILLLAGFKNIKSK 474
Query: 682 XRGS 693
GS
Sbjct: 475 VIGS 478
>At3g18530.1 68416.m02357 expressed protein similar to unknown
protein GB:AAF24615 from [Arabidopsis thaliana]
Length = 297
Score = 28.7 bits (61), Expect = 4.8
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = -2
Query: 524 LLPQ*PLRTGKTDNLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVCF 345
LL Q L++ + A R VA + H +P + P L P N R+R A CF
Sbjct: 166 LLTQLLLKSSQDKRFVCEAAERALVAMTT-HVSPALLLPKLRPCLKNKSPRIRAKASACF 224
Query: 344 CTGMIFRTSSFR 309
+G + R + R
Sbjct: 225 -SGCVPRLEAAR 235
>At3g01450.1 68416.m00069 expressed protein
Length = 326
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/67 (28%), Positives = 29/67 (43%)
Frame = -2
Query: 545 TVCGFPILLPQ*PLRTGKTDNLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVR 366
T+ +LL Q L++ + A + VA + H +P + P L P N R+R
Sbjct: 159 TIDQLDLLLTQLLLKSSQDKRFVCEAAEKALVAMTA-HVSPALLLPKLQPFLKNRNPRIR 217
Query: 365 CPARVCF 345
A CF
Sbjct: 218 AKASTCF 224
>At1g28210.2 68414.m03463 DNAJ heat shock protein, putative strong
similarity to mitochondrial DnaJ protein (AtJ1)
GI:564030 from [Arabidopsis thaliana]; contains Pfam
profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal
region, PF00684: DnaJ central domain (4 repeats);
identical to cDNA DnaJ homolog AtJ1 (atj) GI:564029
Length = 427
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = +1
Query: 478 AKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPXKLLXMA 657
A +S+ P RG G P T C+ G + + RG+GIV +L+
Sbjct: 198 AAMSICPTCRGV-GRVTIPPFTASCQTCKGTGHIIKEYCMSCRGSGIVEGTKTAELVIPG 256
Query: 658 GVQ 666
GV+
Sbjct: 257 GVE 259
>At1g28210.1 68414.m03462 DNAJ heat shock protein, putative strong
similarity to mitochondrial DnaJ protein (AtJ1)
GI:564030 from [Arabidopsis thaliana]; contains Pfam
profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal
region, PF00684: DnaJ central domain (4 repeats);
identical to cDNA DnaJ homolog AtJ1 (atj) GI:564029
Length = 408
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = +1
Query: 478 AKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPXKLLXMA 657
A +S+ P RG G P T C+ G + + RG+GIV +L+
Sbjct: 198 AAMSICPTCRGV-GRVTIPPFTASCQTCKGTGHIIKEYCMSCRGSGIVEGTKTAELVIPG 256
Query: 658 GVQ 666
GV+
Sbjct: 257 GVE 259
>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
transporter ZIP2 [Arabidopsis thaliana]
gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 353
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 382 AFVAIGDNNGHIGLGVKCSKE 444
AFVA G NN H+G V S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169
>At3g59580.1 68416.m06648 RWP-RK domain-containing protein similar
to nodule inception protein [Lotus japonicus]
GI:6448579; contains Pfam profile: PF02042 RWP-RK domain
Length = 894
Score = 28.3 bits (60), Expect = 6.3
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Frame = -1
Query: 741 GNGSICGFSKISQGAS*TTX*GVAVLYTSHXKKLXRNW---RRHNSSTTRGRNQPDCYRT 571
GNG++ IS S ++ AVL S L +NW R HN+S G + +
Sbjct: 738 GNGTVEPNHSISSSMSDSSNSSGAVLLGSSSASLEQNWNQIRTHNNSGESGSSSTLTVKA 797
Query: 570 TLAGDLAR 547
T D R
Sbjct: 798 TYREDTVR 805
>At2g04050.1 68415.m00386 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile: PF01554
uncharacterized membrane protein family
Length = 476
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +1
Query: 538 HTVPCKVTGKCGSVTVRL 591
H VPCK T K G VTV L
Sbjct: 11 HLVPCKDTWKSGQVTVEL 28
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,601,665
Number of Sequences: 28952
Number of extensions: 347859
Number of successful extensions: 893
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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