Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_K09
         (796 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)                   33   0.20 
SB_29958| Best HMM Match : Pkinase (HMM E-Value=2.6e-08)               30   1.9  
SB_12805| Best HMM Match : LicD (HMM E-Value=9.7e-06)                  30   2.5  
SB_51159| Best HMM Match : DUF1140 (HMM E-Value=2.3)                   29   3.3  
SB_44720| Best HMM Match : Helicase_C (HMM E-Value=0.59)               29   3.3  
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_34759| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_1181| Best HMM Match : DUF1604 (HMM E-Value=0)                      28   7.6  

>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
          Length = 210

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 26/93 (27%), Positives = 45/93 (48%)
 Frame = +3

Query: 360 IFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTK 539
           I + G  ++ E +H    S+F  +Y+LP     + V++ +T DG L + A  +E     +
Sbjct: 64  IKIDGKHKS-EGEHGYETSEFHRSYNLPDGVDVSTVSSRITGDGLLHIEALKAE----PQ 118

Query: 540 NTERVVPIVETGAPYKKDEPVEKTTVETLDVST 638
            TE  +    TG+     +  +K    TLDVS+
Sbjct: 119 ETEVSLVGASTGSAGDIAKIDDKRFTVTLDVSS 151


>SB_29958| Best HMM Match : Pkinase (HMM E-Value=2.6e-08)
          Length = 857

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 19/62 (30%), Positives = 30/62 (48%)
 Frame = +2

Query: 605 KDDSRNLGRFYDSGAEDISSSGSDCSTGTRGEERTDHALRTR*SDRKRQRDPTRKRSFCL 784
           KD+ RNLG+  D   E+  S G++   G +  E T      + +    Q  P  ++SF L
Sbjct: 303 KDEDRNLGKNKDERHEEY-SKGNENMDGIKPFELTPEIEAIQSTTTDEQNKPNTEQSFLL 361

Query: 785 SD 790
           S+
Sbjct: 362 SE 363


>SB_12805| Best HMM Match : LicD (HMM E-Value=9.7e-06)
          Length = 371

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 21/62 (33%), Positives = 27/62 (43%)
 Frame = -1

Query: 271 ILGPMSTKVGISFHRGAKRLNGERFSHGNVNWSSVMVTGCAITSLSRAGKAVTVVKPAKA 92
           I+GP+  K G  F     R  G  F     NW  V+ T    T +S A   + VV+PA  
Sbjct: 217 IMGPLWFKHGDIFPVARLRFEGFMFDVPR-NWKQVLRTLYGRTGISAAVPTLMVVEPAPT 275

Query: 91  MK 86
            K
Sbjct: 276 QK 277


>SB_51159| Best HMM Match : DUF1140 (HMM E-Value=2.3)
          Length = 444

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +3

Query: 150 AQPVTITDDQFTFPWLNLSPFSLFAPLWKLIPTFVDIGP 266
           + P T T DQ +  + + SPFS  APL    P FVD  P
Sbjct: 219 SSPETFTSDQLSPTYSSPSPFSSKAPL----PVFVDFTP 253


>SB_44720| Best HMM Match : Helicase_C (HMM E-Value=0.59)
          Length = 625

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +3

Query: 432 YSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETGAPY 584
           YS+    S       + SD YL+ TA +SE +D +    R V I  TG P+
Sbjct: 171 YSITRGHSVMSEHLNIISDRYLLFTAQVSEGLDFSDINGRAVVI--TGLPF 219


>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +2

Query: 566 RDWRSVQEGRACRKDDSRNLGRFYDSGAEDISSSGSDCSTGTRGEER 706
           R WR+V   R C +  S    +  D GA  + +  + C TGT  E R
Sbjct: 343 RVWRTVPPQRVCLEVPSEKARKIPDDGALTVRTEATGC-TGTANEIR 388


>SB_34759| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 633

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 689 TRGEERTDHALRTR*SDRKRQRDPTRKRSF 778
           TRG ER++HA +     RK +++ T+  SF
Sbjct: 240 TRGHERSEHAEKAAELKRKEKKEATKHNSF 269


>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2834

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +3

Query: 435  SLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETGAPYKKDEPVEKT 611
            ++PVN+ A          G  +VT  ++  V +   T  V P+V   A   K EP  +T
Sbjct: 1250 TMPVNTQAVVANMVTQPHGTTIVTPAVANMVTQPHGTTIVTPVVTQSAVATK-EPARRT 1307


>SB_1181| Best HMM Match : DUF1604 (HMM E-Value=0)
          Length = 1035

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 372 GSQEAKEDDHDVFASQFFHTYSLPVNSSAA 461
           G+   +E+D DV+A      Y +P N SAA
Sbjct: 245 GTGVFEEEDDDVYAQDIMSNYDIPKNISAA 274


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,997,532
Number of Sequences: 59808
Number of extensions: 391923
Number of successful extensions: 1480
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1477
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)