Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_K08
         (486 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34555.1 68417.m04910 40S ribosomal protein S25, putative           93   9e-20
At4g39200.1 68417.m05550 40S ribosomal protein S25 (RPS25E) ribo...    91   3e-19
At2g21580.1 68415.m02567 40S ribosomal protein S25 (RPS25B)            91   3e-19
At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A)            85   3e-17
At4g27630.1 68417.m03971 expressed protein                             30   0.95 
At1g14500.1 68414.m01719 ankyrin repeat family protein contains ...    29   2.2  
At2g17250.1 68415.m01992 expressed protein weak similarity to Ri...    28   3.8  
At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative simila...    27   6.7  
At5g16810.1 68418.m01969 expressed protein                             27   6.7  
At2g23170.1 68415.m02768 auxin-responsive GH3 family protein sim...    27   8.9  
At1g24706.1 68414.m03104 expressed protein                             27   8.9  

>At4g34555.1 68417.m04910 40S ribosomal protein S25, putative
          Length = 108

 Score = 93.1 bits (221), Expect = 9e-20
 Identities = 42/72 (58%), Positives = 55/72 (76%)
 Frame = +2

Query: 143 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQH 322
           +NN VLFD+ TY+KL  E P++KLITP+++S+RL++ GSLARRA+ EL  KG I+ V  H
Sbjct: 37  VNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRELMAKGTIRMVSAH 96

Query: 323 HGQVIYTRATKG 358
             Q IYTRAT G
Sbjct: 97  SSQQIYTRATHG 108


>At4g39200.1 68417.m05550 40S ribosomal protein S25 (RPS25E)
           ribosomal protein S25, Lycopersicon esculentum,
           PIR2:S40089
          Length = 108

 Score = 91.5 bits (217), Expect = 3e-19
 Identities = 40/70 (57%), Positives = 55/70 (78%)
 Frame = +2

Query: 143 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQH 322
           +NN VLFD+ TY+KL  E P++KLITP+++S+R+++ GSLARRA+ EL  KG+I+ V  H
Sbjct: 37  VNNMVLFDQATYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAH 96

Query: 323 HGQVIYTRAT 352
             Q IYTRAT
Sbjct: 97  SSQQIYTRAT 106


>At2g21580.1 68415.m02567 40S ribosomal protein S25 (RPS25B)
          Length = 108

 Score = 91.5 bits (217), Expect = 3e-19
 Identities = 41/70 (58%), Positives = 55/70 (78%)
 Frame = +2

Query: 143 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQH 322
           +NN VLFD+ TY+KL  E P++KLITP+++S+R+++ GSLARRA+ EL  KGLI+ V  H
Sbjct: 37  VNNMVLFDQGTYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAH 96

Query: 323 HGQVIYTRAT 352
             Q IYTRAT
Sbjct: 97  SSQQIYTRAT 106


>At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A) 
          Length = 125

 Score = 84.6 bits (200), Expect = 3e-17
 Identities = 38/70 (54%), Positives = 53/70 (75%)
 Frame = +2

Query: 143 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQH 322
           +NN VLFD+ TY+KL  E P++KLITP+++S+RL++ GSLAR+A+ +L  KG I+ V  H
Sbjct: 53  VNNMVLFDQATYDKLMSEAPKFKLITPSILSDRLRINGSLARKAIRDLMVKGTIRMVSTH 112

Query: 323 HGQVIYTRAT 352
             Q I TRAT
Sbjct: 113 SSQQINTRAT 122


>At4g27630.1 68417.m03971 expressed protein
          Length = 348

 Score = 29.9 bits (64), Expect = 0.95
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = -1

Query: 336 ITCP*CWTTCLMRPFSLSSMSALLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGL 166
           I  P CWTT L  PF L    ++     R   +  T   V+S +   +L  +SY+ L
Sbjct: 4   ILSPTCWTTLLKHPFILKGFFSMPQLVSRIGVIGVTLMAVLSGFGAVNL-PYSYISL 59


>At1g14500.1 68414.m01719 ankyrin repeat family protein contains
           Pfam domain, PF00023: Ankyrin repeat
          Length = 436

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -1

Query: 207 YCGTSLYSFSYVGLSN--NTWLFNLSRTFPLDHFFFLALPPPDPSFFFC 67
           +C   LY+F  + + +   TW F +  +  + +   +A+  P+P  F C
Sbjct: 342 FCCALLYTFCLLPIGSLFTTWFFWIGASLGVSYALAMAIISPNPLLFLC 390


>At2g17250.1 68415.m01992 expressed protein weak similarity to
           Ribosome biogenesis protein MAK21 (Swiss-Prot:Q12176)
           [Saccharomyces cerevisiae]
          Length = 577

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 13/47 (27%), Positives = 29/47 (61%)
 Frame = +2

Query: 146 NNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIEL 286
           +++ + +KPT +K   E     L++PA +S+R+K++ + A  + + L
Sbjct: 245 SDESISEKPTDKKKKTEKGDSTLLSPATISKRMKLKFTKAWISFLRL 291


>At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative similar to
            CAF protein [Arabidopsis thaliana] GI:6102610; contains
            Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
            Helicase conserved C-terminal domain, PF03368: Domain of
            unknown function, PF00636: RNase3 domain, PF00035:
            Double-stranded RNA binding motif
          Length = 1676

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = -3

Query: 322  MLDYLFDETFFPKLDECSSRQGTSDL*SFRYDSRCD*LVLWDF-LVQFLICGFIKQHLVV 146
            +LDYL    FF    +    Q T DL S   ++     V   F L +FL C  I  H V+
Sbjct: 1310 VLDYLMTSYFFTVFPKLKPGQLT-DLRSLSVNNEALANVAVSFSLKRFLFCESIYLHEVI 1368

Query: 145  QLVTNF 128
            +  TNF
Sbjct: 1369 EDYTNF 1374


>At5g16810.1 68418.m01969 expressed protein 
          Length = 418

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 10  FKDAAQEGREGFGQTAS-KNTEEEGRIRWRQSQEEEVVQRK 129
           F+D  ++    + QTAS K T    +  W   ++E++++R+
Sbjct: 181 FRDGGKDSAADYAQTASEKTTRARSQGVWNPYEKEQMIKRR 221


>At2g23170.1 68415.m02768 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591; contains Pfam profile PF03321: GH3
           auxin-responsive promoter
          Length = 595

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 181 LICGFIKQHLVVQLVTNFSFGPLLLLGFAAT 89
           ++CG + +H V++L   F+ G L  +GF  T
Sbjct: 213 MLCGLLMRHEVLRLGAVFASGLLRAIGFLQT 243


>At1g24706.1 68414.m03104 expressed protein
          Length = 1781

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 144  NLSRTFPLDHFFFLALPPPDP 82
            +L ++ P DHF    LPPP P
Sbjct: 1562 SLEKSHPDDHFHSQGLPPPPP 1582


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,001,857
Number of Sequences: 28952
Number of extensions: 186878
Number of successful extensions: 594
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 838967680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)