Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_K06
(513 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35451| Best HMM Match : Ribosomal_L36e (HMM E-Value=0) 122 2e-28
SB_19393| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_13913| Best HMM Match : WH2 (HMM E-Value=8.8e-05) 29 1.7
SB_6230| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_22067| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_45611| Best HMM Match : p450 (HMM E-Value=0) 28 3.9
SB_27155| Best HMM Match : Dynein_heavy (HMM E-Value=1.1e-09) 27 6.9
SB_26477| Best HMM Match : GST_C (HMM E-Value=0.97) 27 6.9
SB_14664| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_44813| Best HMM Match : Crystallin (HMM E-Value=0.26) 27 9.1
SB_31885| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28) 27 9.1
>SB_35451| Best HMM Match : Ribosomal_L36e (HMM E-Value=0)
Length = 100
Score = 122 bits (293), Expect = 2e-28
Identities = 62/103 (60%), Positives = 75/103 (72%)
Frame = +1
Query: 73 IAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKR 252
+AVGL+KGHK TK + +P+R KG K KFVRD+VREVVG A YEKR
Sbjct: 1 MAVGLQKGHKVTK----------NVTKPKPSRRKGASNKRVKFVRDVVREVVGFAPYEKR 50
Query: 253 AMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 381
MELL++ KDKRALKF K+RLGTH+R KRKREE+++VLA MRK
Sbjct: 51 VMELLRIGKDKRALKFCKKRLGTHVRGKRKREEITSVLAAMRK 93
>SB_19393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1660
Score = 29.9 bits (64), Expect = 1.3
Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 12/107 (11%)
Frame = +1
Query: 79 VGLRKGHKTT-----KISAGRKGITDKAIRIRPARLKGLQ----TKHS---KFVRDLVRE 222
V RKGHK T + G+KGI K R+ +R Q KHS K +R +RE
Sbjct: 1109 VSTRKGHKRTENYNDRKRDGKKGIDGKRERLSSSRSDDFQQSKMIKHSHLEKSLRQAMRE 1168
Query: 223 VVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNV 363
+ H+ E KV K K+ ++F K + G ++ + E+ V
Sbjct: 1169 -LEHSSENSSEEEKRKVRK-KKLVEF-KNKHGLDVKKMDESEKRKKV 1212
>SB_13913| Best HMM Match : WH2 (HMM E-Value=8.8e-05)
Length = 493
Score = 29.5 bits (63), Expect = 1.7
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Frame = +1
Query: 52 IMAPRFEIAVGLRKGHKTTKISAGRKGITD---KAIRIRPARLKGLQTKHSKFVRDLVRE 222
+ AP+ E V K K K+S ++ + +AI A LK + K + +R++++
Sbjct: 267 LSAPQNEEKVETPKSSKKEKLSELKRRLATPMREAIEAGIA-LKQTKKKLATPLREVIKS 325
Query: 223 VVGHAQYEKR-AMELLKVSKDKRALKFLKRRLGTHIRAK 336
+ +K+ A L K + K ALK K+RL T IRA+
Sbjct: 326 KPKLKETKKKLATPLRKEIQSKPALKETKKRLATPIRAE 364
>SB_6230| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 191
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 172 KGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDK 285
+GL+ K + ++ E GHA Y+K L KVS+++
Sbjct: 32 RGLRKVSRKHAQRILDETAGHASYKKEHRGLRKVSREQ 69
Score = 29.5 bits (63), Expect = 1.7
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = +1
Query: 172 KGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREE 351
+GL+ K R ++ E GH Y+K L KVS+ K A + L G H K++
Sbjct: 88 RGLRKVSRKHARRILDETAGHNTYKKEHRGLRKVSR-KHAQRILDGTAG-HCSYKKEHRG 145
Query: 352 L 354
L
Sbjct: 146 L 146
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +1
Query: 172 KGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKR 345
+GL+ + + ++ E GH Y+K L KVS+ K A + L G + K R
Sbjct: 60 RGLRKVSREQAQRIIDETAGHGSYKKEYRGLRKVSR-KHARRILDETAGHNTYKKEHR 116
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +1
Query: 211 LVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNV 363
++ E GH Y+K L KVS+ K A + L G H K++ L V
Sbjct: 17 ILNETAGHGSYKKEHRGLRKVSR-KHAQRILDETAG-HASYKKEHRGLRKV 65
>SB_22067| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 705
Score = 29.5 bits (63), Expect = 1.7
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = -1
Query: 186 RLKTL*SSWPNS----DGFVCDTLAASGYFSCFVAFSQAYCDFKTRSHDFGLTDPK 31
RLK++ SW N+ G CD A+G F V FS + K R H D K
Sbjct: 440 RLKSMRWSWENARTSKGGQSCDDPDATGDFEDEVTFSDPHLQKKFRRHSLKTLDTK 495
>SB_45611| Best HMM Match : p450 (HMM E-Value=0)
Length = 847
Score = 28.3 bits (60), Expect = 3.9
Identities = 16/29 (55%), Positives = 18/29 (62%)
Frame = +1
Query: 274 SKDKRALKFLKRRLGTHIRAKRKREELSN 360
+K RALKFLK RL +R KR E L N
Sbjct: 59 NKSPRALKFLKTRL-QDLRKKRDSETLRN 86
>SB_27155| Best HMM Match : Dynein_heavy (HMM E-Value=1.1e-09)
Length = 1248
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +1
Query: 157 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 288
RP +L+ ++ + +VR L + G +Y + L++ SKD R
Sbjct: 625 RPNKLQVIKLSDANYVRTLENSIQGGIEYLRLGDHLVEFSKDFR 668
>SB_26477| Best HMM Match : GST_C (HMM E-Value=0.97)
Length = 971
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -3
Query: 316 PIVASRTSEHACLLTP*VTP*PSSHIERVRQLRVLNHGQTW 194
P +S A L+ P PS ++ R+ R NHG+TW
Sbjct: 772 PTERDYSSALAALMRKAKQPKPSPNLVHTRRERPRNHGRTW 812
>SB_14664| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 61
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/45 (26%), Positives = 27/45 (60%)
Frame = +1
Query: 217 REVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREE 351
RE+ + + + E++K+ K K++ K +K++ + K+K+EE
Sbjct: 3 REINQKDKKQIKKEEIIKIKKKKKSKKKIKKKKKKKKKKKKKKEE 47
>SB_44813| Best HMM Match : Crystallin (HMM E-Value=0.26)
Length = 688
Score = 27.1 bits (57), Expect = 9.1
Identities = 22/102 (21%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Frame = +1
Query: 4 PADETSVLFLRICQSEIMAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQ 183
PAD+ ++ S + R + A + + + T + GRK +K + ++ A L+ ++
Sbjct: 570 PADQCMSYHEKMNYSPRLLQRRKTAPNVIRPNSTMALETGRKASEEKDLVLKQAMLRRIE 629
Query: 184 -----TKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRAL 294
TK K ++ + K ++ L K+ K++R L
Sbjct: 630 IQDKVTKAKKLSQNHFGDTRHRECSRKLSISLSKIDKNERKL 671
>SB_31885| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28)
Length = 922
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +1
Query: 136 TDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRAL 294
TDK +++ PA+++ + S + V+ ++G AQY K +L ++K R L
Sbjct: 659 TDKGLKVDPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKSCPQLSDITKPLRDL 712
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,727,082
Number of Sequences: 59808
Number of extensions: 244425
Number of successful extensions: 727
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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