Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_K04
         (726 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.014
SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_52147| Best HMM Match : EGF (HMM E-Value=0)                         29   3.8  
SB_40851| Best HMM Match : TSP_1 (HMM E-Value=3.4e-09)                 28   6.7  

>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5222

 Score = 37.1 bits (82), Expect = 0.014
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +2

Query: 416  PGTDKCWPAFRQGPCEVGQYLVLPQNSVIPVCEQNPCNTDTLVQWNGNCEKLGSVAPC 589
            P  D  WP    GPC++G Y   P+ +  P+    PC  +T+  + G    +    PC
Sbjct: 2827 PNPDGYWPPVEAGPCKMGHY--CPKGTQAPL----PCPDNTMKNYTGGAGTVDDCTPC 2878


>SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1717

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 28/109 (25%), Positives = 38/109 (34%), Gaps = 1/109 (0%)
 Frame = +2

Query: 251  DAIGFPEMEENPDLRNKENRQPVFIPARCPDNELFYPGDQKDDWICDCRPANLYHPGTDK 430
            D    P+   NPD   + +    F P RC +    + G   +D +C          G  +
Sbjct: 1323 DGCEIPDCPGNPDCAGRGHCNTSFDPPRCTNCSQGWMGQACED-LCVHGTQVPMDSGNCQ 1381

Query: 431  CWPAFRQGPCEVGQYLVLPQNSVIPVCEQNPCNTDTLVQWNGN-CEKLG 574
            C   F    C V       + S    C    C  DTL  W G+ CE  G
Sbjct: 1382 CDACFTGRGCNV-------ECSGHGQCVNGACACDTLAGWRGSLCEVPG 1423


>SB_52147| Best HMM Match : EGF (HMM E-Value=0)
          Length = 364

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +2

Query: 491 NSVIPVCEQNPCNTDTLVQWNGN--CEKL 571
           +++I  C+ NPCN  T +Q  G+  CE L
Sbjct: 168 DTMIDACQSNPCNDGTCIQQTGSFYCECL 196



 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = +2

Query: 494 SVIPVCEQNPCNTDTLVQWNGN--CEKL 571
           ++I  C  NPCN  T +Q  G+  CE L
Sbjct: 132 TLIDACHSNPCNDGTCIQQTGSFYCECL 159


>SB_40851| Best HMM Match : TSP_1 (HMM E-Value=3.4e-09)
          Length = 925

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 503 PVCEQNPCNTDTLVQWNGNCEKLGSVAPCNHLYPIS 610
           P  E+  CN D  V  +GNC+ + +  PCN  + ++
Sbjct: 676 PNTEEVNCNED--VTCSGNCDIICTATPCNSTFDVT 709


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,847,963
Number of Sequences: 59808
Number of extensions: 498003
Number of successful extensions: 1160
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)