Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_K04
         (726 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50872-1|CAA90754.2| 1052|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AL132949-24|CAB61102.1|  860|Caenorhabditis elegans Hypothetical...    29   4.5  
AL023835-12|CAA19484.1|  412|Caenorhabditis elegans Hypothetical...    29   4.5  
AF016419-9|AAG24054.1| 2025|Caenorhabditis elegans Hypothetical ...    29   4.5  
U64601-2|AAQ82847.1|  592|Caenorhabditis elegans Temporarily ass...    28   7.8  
U64601-1|AAB04573.2|  564|Caenorhabditis elegans Temporarily ass...    28   7.8  

>Z50872-1|CAA90754.2| 1052|Caenorhabditis elegans Hypothetical protein
            C05D12.2 protein.
          Length = 1052

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 23/58 (39%), Positives = 25/58 (43%)
 Frame = +2

Query: 335  CPDNELFYPGDQKDDWICDCRPANLYHPGTDKCWPAFRQGPCEVGQYLVLPQNSVIPV 508
            CP     Y GD   D IC   P   Y  G   C P F    CE+   LVLP+N  I V
Sbjct: 971  CPSR---YTGDYCWDRIC--HPPATYSFGICSCPPGFYGDFCEI--MLVLPKNGSILV 1021


>AL132949-24|CAB61102.1|  860|Caenorhabditis elegans Hypothetical
           protein Y53F4B.28 protein.
          Length = 860

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/71 (25%), Positives = 32/71 (45%)
 Frame = +2

Query: 20  PQASSLSPRFVNLIRQHAFSFLXGHSXYCXAFLLYNKTXXYFKPRLLTVIEFKMCYLNII 199
           P   +L+  F N +R  AF        +   + + ++T    + R +T+       L I+
Sbjct: 199 PNGRALATDFENKVR--AFFASISDLSHHIKYSVLSRTRELEEQRAITITSLPFLGLTIV 256

Query: 200 FLTCALLVTSI 232
            LTC +LVT +
Sbjct: 257 VLTCFMLVTLV 267


>AL023835-12|CAA19484.1|  412|Caenorhabditis elegans Hypothetical
           protein Y37A1B.13 protein.
          Length = 412

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = -1

Query: 294 LKSGFSSISGNPIASFELFCAIDVTNNAHVRNIIF 190
           +  G+  +S N   + ++FC+I  +  +H+ NI+F
Sbjct: 37  ISHGYFDVSKNTQITSDIFCSISFSFTSHLSNILF 71


>AF016419-9|AAG24054.1| 2025|Caenorhabditis elegans Hypothetical
           protein F07G11.9 protein.
          Length = 2025

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 539 LVQWNGNCEKLGSVAPCNHLYPISSSLGVNSTTL 640
           +V+ +G C +  ++ P N  + IS + G+N T L
Sbjct: 700 MVETSGTCNEYATITPGNTCFNISVAYGINLTDL 733


>U64601-2|AAQ82847.1|  592|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 126, isoform b protein.
          Length = 592

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +2

Query: 563 EKLGSVAPCNHLYPISSSLGVNSTTLVVSCVTLSLETRFTEVIGVL 700
           + LGS +P +   P+   LG++   + +  V L L T F  ++ VL
Sbjct: 77  DTLGSNSPLSEYLPVKLCLGIHDVFIALFLVMLILLTIFGNILVVL 122


>U64601-1|AAB04573.2|  564|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 126, isoform a protein.
          Length = 564

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +2

Query: 563 EKLGSVAPCNHLYPISSSLGVNSTTLVVSCVTLSLETRFTEVIGVL 700
           + LGS +P +   P+   LG++   + +  V L L T F  ++ VL
Sbjct: 49  DTLGSNSPLSEYLPVKLCLGIHDVFIALFLVMLILLTIFGNILVVL 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,937,163
Number of Sequences: 27780
Number of extensions: 380551
Number of successful extensions: 1078
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)