Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_K04
         (726 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g10720.2 68416.m01291 pectinesterase, putative contains simil...    28   5.5  
At5g23920.1 68418.m02809 expressed protein                             28   7.2  
At3g09780.1 68416.m01161 protein kinase family protein contains ...    27   9.6  
At2g42395.1 68415.m05247 expressed protein                             27   9.6  
At2g17787.1 68415.m02061 expressed protein                             27   9.6  

>At3g10720.2 68416.m01291 pectinesterase, putative contains
           similarity to pectinesterase from Vitis vinifera
           GI:15081598, Prunus persica SP|Q43062; contains Pfam
           profile PF01095 pectinesterase
          Length = 619

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = +2

Query: 179 MCYLNIIFLTCALLVTSIAQNSSKDAIGFPEMEENPDLRN---KENRQPVFIPARCP 340
           + +L+ IFL+CALL++S    S   +    ++   P + +     ++ P+F+P   P
Sbjct: 12  LLFLSFIFLSCALLISSQQSPSQPHSEPPSQLPFEPPVESPFFPPSQPPIFVPPSQP 68


>At5g23920.1 68418.m02809 expressed protein 
          Length = 229

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 314 PVFIPARCPDNELFYPGDQKDD 379
           PVF+P  C   E+++ GD KDD
Sbjct: 211 PVFLPRSC---EIYFSGDNKDD 229


>At3g09780.1 68416.m01161 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 775

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 10/107 (9%)
 Frame = +2

Query: 362 GDQKDDWICDCRPAN-----LYHPGTDKCWPAF-RQGPCEVGQYL----VLPQNSVIPVC 511
           G +++D + DC   N      Y P  + C P   R GPC   ++     +L +  +  +C
Sbjct: 314 GIREEDLVLDCWMVNGSSTLAYDPPLELCSPGMCRAGPCNEKEFAFNASILNEPDLTSLC 373

Query: 512 EQNPCNTDTLVQWNGNCEKLGSVAPCNHLYPISSSLGVNSTTLVVSC 652
            +     + +V     C   GS   C+H + +SSS   NS  +   C
Sbjct: 374 VRK----ELMV-----CSPCGS--DCSHGFFLSSSCTANSDRICTPC 409


>At2g42395.1 68415.m05247 expressed protein
          Length = 104

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 530 CCKGFARKPELLNFVEELDTV 468
           CC+ F   PE++NF++E+  V
Sbjct: 47  CCENFYTLPEMINFMKEIHGV 67


>At2g17787.1 68415.m02061 expressed protein
          Length = 324

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +1

Query: 268 GNGRKSRFEK*RESPTSVHSGKMSGQRIVLSGRPKRRLDL*LQTS 402
           G  RK R ++ R+   ++ SGK+    + L  +  + ++L LQTS
Sbjct: 50  GRSRKHRHKRRRKDEGAIASGKLVSSEVELLEKSCQTVELELQTS 94


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,745,054
Number of Sequences: 28952
Number of extensions: 340701
Number of successful extensions: 863
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)