Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_K03
         (781 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45114| Best HMM Match : RasGEF (HMM E-Value=3.7e-24)                29   4.2  
SB_33848| Best HMM Match : RasGEF_N (HMM E-Value=2.3e-13)              29   4.2  
SB_40345| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_6824| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.4  
SB_17923| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  
SB_44630| Best HMM Match : HECT (HMM E-Value=0)                        28   9.8  

>SB_45114| Best HMM Match : RasGEF (HMM E-Value=3.7e-24)
          Length = 315

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
 Frame = +3

Query: 357 FAASLADDLGMKHFPEANMDLHYIRPNGVDLRSFD----DQVPEDTRTFDHVNFNQNPNH 524
           FAA++   LG+K   +  M++       VD  SFD     Q+ E     +H+ F++ P H
Sbjct: 32  FAAAIIRTLGIKQGQKGPMEMDLAPDEQVDPNSFDKISSSQLAEQLTFVEHLLFSRVPAH 91


>SB_33848| Best HMM Match : RasGEF_N (HMM E-Value=2.3e-13)
          Length = 899

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
 Frame = +3

Query: 357 FAASLADDLGMKHFPEANMDLHYIRPNGVDLRSFD----DQVPEDTRTFDHVNFNQNPNH 524
           FAA++   LG+K   +  M++       VD  SFD     Q+ E     +H+ F++ P H
Sbjct: 812 FAAAIIRTLGIKQGQKGPMEMDLAPDEQVDPNSFDKISSSQLAEQLTFVEHLLFSRVPAH 871


>SB_40345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1250

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = +3

Query: 306 NSKVIIVEGPIAAGKTAFAASLADDLGMK 392
           NS +++V GP+  GKT+  +++  +L ++
Sbjct: 440 NSDLVLVTGPVGCGKTSLLSAILGELSVR 468


>SB_6824| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1152

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = -3

Query: 620  NSLASIEQVCQSINILTVPGHIHHYLEVCS-QAMVRILIEINMVKGPSVLGYLVVEGPQV 444
            NS+ +++++  S N LT    ++H L +    A    L  +  VKG S LGYL V   Q+
Sbjct: 889  NSMTALKRLIVSFNELTRLEDVNHMLFLEHLDASFNKLTTLEGVKGCSRLGYLDVSWNQL 948

Query: 443  DAVRTNI 423
               R  +
Sbjct: 949  QYTREEL 955


>SB_17923| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 283

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 375 DDLGMKHFPEANMDLHYIRP 434
           D+ G+ H PEA   L+YIRP
Sbjct: 201 DEEGIPHKPEAQKHLYYIRP 220


>SB_44630| Best HMM Match : HECT (HMM E-Value=0)
          Length = 1003

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = -3

Query: 692 LTQEFLRIHSFQEYKVRVRGPLQHNSLASIEQVCQSINILTVPG 561
           L+ + +++   Q+  + +  PL H S   + ++CQ +N L  PG
Sbjct: 456 LSSQVVKVDEVQQLVILMENPLLHKSQDLLRKLCQVLNALP-PG 498


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,879,823
Number of Sequences: 59808
Number of extensions: 469132
Number of successful extensions: 1096
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)