Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_K03
         (781 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72040.1 68414.m08327 deoxynucleoside kinase family contains ...    33   0.21 
At1g63160.1 68414.m07138 replication factor C 40 kDa, putative s...    31   0.65 
At3g57510.1 68416.m06402 endo-polygalacturonase (ADPG1) identica...    31   1.1  
At5g66630.1 68418.m08398 LIM domain-containing protein contains ...    30   1.5  
At5g14760.1 68418.m01732 L-aspartate oxidase family protein simi...    29   2.6  
At3g56690.1 68416.m06306 calmodulin-binding protein identical to...    29   2.6  
At5g25930.1 68418.m03081 leucine-rich repeat family protein / pr...    29   3.5  
At5g66910.1 68418.m08434 disease resistance protein (CC-NBS-LRR ...    29   4.6  
At5g22330.1 68418.m02605 TATA box-binding protein-interacting pr...    29   4.6  
At2g16750.1 68415.m01921 protein kinase family protein contains ...    29   4.6  
At5g20040.2 68418.m02385 tRNA isopentenyltransferase 9 / IPP tra...    28   6.0  
At5g20040.1 68418.m02384 tRNA isopentenyltransferase 9 / IPP tra...    28   6.0  
At4g04180.1 68417.m00593 AAA-type ATPase family protein contains...    28   8.0  
At3g05790.1 68416.m00650 Lon protease, putative similar to Lon p...    28   8.0  

>At1g72040.1 68414.m08327 deoxynucleoside kinase family contains
           Pfam profile: PF01712 deoxynucleoside kinase
          Length = 580

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 42/152 (27%), Positives = 68/152 (44%), Gaps = 3/152 (1%)
 Frame = +3

Query: 324 VEGPIAAGKTAFAASLADDLGMKHFPEANMDLHYIRPNGVDLRSFDDQVPEDTRTFDHVN 503
           VEG I+ GK+ F   +A++           DL  I P  VD   + D  P+     D   
Sbjct: 270 VEGNISVGKSTFLQRIANE------TVELQDLVEIVPEPVD--KWQDVGPDHFNILD--A 319

Query: 504 FNQNPNHRLAANFQIMMYVARYSQYIDALAHLFNTGQGIVLERSPYSD-FVFLEAMYSQK 680
           F   P  R A  FQ  ++V R  Q  ++ + +       ++ERS +SD  VF+ A++  K
Sbjct: 320 FYSEP-QRYAYTFQNYVFVTRLMQEKESASGVKPLR---LMERSVFSDRMVFVRAVHEAK 375

Query: 681 FLSKAVRSTYYELRENTIEEL--MRPHLXIYL 770
           ++++   S Y    +  +  L  + P   IYL
Sbjct: 376 WMNEMEISIYDSWFDPVVSSLPGLVPDGFIYL 407


>At1g63160.1 68414.m07138 replication factor C 40 kDa, putative
           similar to SWISS-PROT:Q9WUK4 activator 1 40 kDa subunit
           (Replication factor C 40 kDa subunit, A1 40 kDa subunit,
           RF-C 40 kDa subunit, RFC40) [Mus musculus]
          Length = 333

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +3

Query: 300 DDNSKVIIVEGPIAAGKTAFAASLADDLGMKHFPEANMDLHYIRPNGVDL 449
           D N   +I+ GP   GKT    +LA +L   ++ EA ++L+     G+D+
Sbjct: 45  DGNMPNLILSGPPGTGKTTSILALAHELLGTNYKEAVLELNASDDRGIDV 94


>At3g57510.1 68416.m06402 endo-polygalacturonase (ADPG1) identical
           to endo-polygalacturonase [Arabidopsis thaliana]
           GI:2597824
          Length = 431

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +1

Query: 592 HTCSILAKELCWRGPLTLTLYSWKLCILRNS*VRQSGQLIMSCEK 726
           ++C I   + C + P  LTLY+ K   ++N  V+ + Q+ +S EK
Sbjct: 178 NSCKIDKSKPCTKAPTALTLYNLKNLNVKNLRVKNAQQIQISIEK 222


>At5g66630.1 68418.m08398 LIM domain-containing protein contains low
           similarity to Pfam profile PF00412: LIM domain
          Length = 702

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +3

Query: 261 WL-RSLIDRTTHRFDDNSKVIIVEGPIAAGKTAFAASLADDLGMK 392
           WL R L++     F+D    ++V  P A GKT     L  D  +K
Sbjct: 171 WLKRPLMELKKMLFEDGVVTVVVSAPYALGKTTLVTKLCHDADVK 215


>At5g14760.1 68418.m01732 L-aspartate oxidase family protein similar
           to L-aspartate oxidase, Escherichia coli [SP|P10902];
           contains Pfam profiles PF00890 FAD binding domain,
           PF02910 Fumarate reductase/succinate dehydrogenase
           flavoprotein C-terminal domain
          Length = 651

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +3

Query: 378 DLGMKHFPEANMDLHYIRPNGVDLRSFDDQVPEDTRTFDHVNFNQNPNHRLAANF 542
           +LGM+ F     +   + P  V  RS DDQ+ +    +  ++ +  P  ++ A+F
Sbjct: 349 NLGMERFMPVYDERAELAPRDVVARSIDDQLKKRNEKYVLLDISHKPREKILAHF 403


>At3g56690.1 68416.m06306 calmodulin-binding protein identical to
           calmodulin-binding protein GI:6760428 from [Arabidopsis
           thaliana]
          Length = 1022

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
 Frame = +3

Query: 243 VNKDYTWLRSLIDRTTHRFDDNS------KVIIVEGPIAAGKTAFAASLADDLGMKHF 398
           ++K+Y  LR +ID ++ +   +S      K +++ GP   GKT+ A + A   G+  F
Sbjct: 390 LSKEYAILRDIIDSSSIKNSLSSLGLRPTKGVLIHGPPGTGKTSLARTFARHSGVNFF 447


>At5g25930.1 68418.m03081 leucine-rich repeat family protein /
           protein kinase family protein contains similarity to
           Swiss-Prot:P47735 receptor-like protein kinase 5
           precursor [Arabidopsis thaliana]; contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1005

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +3

Query: 450 RSFDDQVPEDTRTFDHVNFNQNPNHRLAANFQIMMYVARYSQYIDALAHLFNTGQGIVLE 629
           ++F   VP       ++NF     +  A  F  ++Y     QY+D   +L N    + ++
Sbjct: 73  QNFTGTVPTTICDLSNLNFLDLSFNYFAGEFPTVLYNCTKLQYLDLSQNLLNGSLPVDID 132

Query: 630 R-SPYSDFVFLEA 665
           R SP  D++ L A
Sbjct: 133 RLSPELDYLDLAA 145


>At5g66910.1 68418.m08434 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 815

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +3

Query: 303 DNSKVIIVEGPIAAGKTAFAASLADD 380
           DNS V++V GP   GKT     L DD
Sbjct: 188 DNS-VVVVSGPPGCGKTTLVTKLCDD 212


>At5g22330.1 68418.m02605 TATA box-binding protein-interacting
           protein-related similar to TATA box-binding
           protein-interacting protein SP:O35753 from [ Mus
           musculus]
          Length = 458

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 312 KVIIVEGPIAAGKTAFAASLADDLGMK 392
           K +++ GP   GKTA A  ++ +LG K
Sbjct: 67  KALLLAGPPGTGKTALALGISQELGSK 93


>At2g16750.1 68415.m01921 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 617

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = -3

Query: 560 HIHHYLEVCSQAMVRILIEINMVKGPSVLGYLVVEGPQVDAV 435
           ++  Y+E CS   + +  E+  +KG SVLG LV E  + +A+
Sbjct: 64  YLKPYIEFCSTKKIELKGEV--LKGNSVLGVLVKEAKRYNAM 103


>At5g20040.2 68418.m02385 tRNA isopentenyltransferase 9 / IPP
           transferase 9 (IPT9) identical to tRNA
           isopentenyltransferase (IPT9) [Arabidopsis thaliana]
           GI:14279070
          Length = 459

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 303 DNSKVIIVEGPIAAGKTAFAASLADDL 383
           +  KVI++ GP  AGK+  A  LA  L
Sbjct: 48  EKEKVIVISGPTGAGKSRLAMELAKRL 74


>At5g20040.1 68418.m02384 tRNA isopentenyltransferase 9 / IPP
           transferase 9 (IPT9) identical to tRNA
           isopentenyltransferase (IPT9) [Arabidopsis thaliana]
           GI:14279070
          Length = 463

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 303 DNSKVIIVEGPIAAGKTAFAASLADDL 383
           +  KVI++ GP  AGK+  A  LA  L
Sbjct: 48  EKEKVIVISGPTGAGKSRLAMELAKRL 74


>At4g04180.1 68417.m00593 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family
          Length = 609

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
 Frame = +3

Query: 273 LIDRTTHRFDDNS-KVIIVEGPIAAGKTAFAASLADDLG--MKHFP-EANMDLHY 425
           ++  T  +F+ N  + ++ EGP   GKT+ A  +A+  G  + + P EA M  +Y
Sbjct: 348 IVRGTRSKFESNRPRAVLFEGPPGTGKTSCARVIANQAGIPLLYVPLEAVMSKYY 402


>At3g05790.1 68416.m00650 Lon protease, putative similar to Lon
           protease homolog 2 SP:P93655
          Length = 942

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 294 RFDDNSKVIIVEGPIAAGKTAFAASLADDLGMKHF 398
           R     K+I + GP   GKT+   S+A  L  K F
Sbjct: 444 RGTSQGKIICLSGPTGVGKTSIGRSIARALDRKFF 478


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,654,288
Number of Sequences: 28952
Number of extensions: 316538
Number of successful extensions: 860
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)