Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_J23
         (552 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2F5Z3 Cluster: Double-stranded RNA-binding zinc finger...   182   6e-45
UniRef50_P32584 Cluster: Protein-S-isoprenylcysteine O-methyltra...    38   0.20 
UniRef50_Q875B9 Cluster: Part of an hypothetical protein Pa5D000...    36   0.47 
UniRef50_Q9FYL8 Cluster: F21J9.11; n=1; Arabidopsis thaliana|Rep...    33   4.4  
UniRef50_UPI0001555097 Cluster: PREDICTED: hypothetical protein;...    33   5.8  
UniRef50_A6LGL8 Cluster: Putative outer membrane protein, probab...    33   5.8  
UniRef50_A2YBK4 Cluster: Putative uncharacterized protein; n=1; ...    32   7.7  

>UniRef50_Q2F5Z3 Cluster: Double-stranded RNA-binding zinc finger
           protein JAZ; n=1; Bombyx mori|Rep: Double-stranded
           RNA-binding zinc finger protein JAZ - Bombyx mori (Silk
           moth)
          Length = 430

 Score =  182 bits (442), Expect = 6e-45
 Identities = 85/115 (73%), Positives = 85/115 (73%)
 Frame = +1

Query: 208 MSIPFYKMNSREEYEMNEDCGWTEEPPRLPRRKIRNNEYSNAFGNYNGGYWSDDQXXXXX 387
           MSIPFYKMNSREEYEMNEDCGWTEEPPRLPRRKIRNNEYSNAFGNYNGGYWSDDQ     
Sbjct: 1   MSIPFYKMNSREEYEMNEDCGWTEEPPRLPRRKIRNNEYSNAFGNYNGGYWSDDQGPGPF 60

Query: 388 XXXXXXXXXXXXXXXXXXXXXXXXNQNPFGRGFGPDGPAMRRPNRVERVKRYXMR 552
                                   NQNPFGRGFGPDGPAMRRPNRVERVKRY MR
Sbjct: 61  DHPPRPPPNFMFGPGPGPMFGPLPNQNPFGRGFGPDGPAMRRPNRVERVKRYLMR 115


>UniRef50_P32584 Cluster: Protein-S-isoprenylcysteine
           O-methyltransferase; n=4; Saccharomycetaceae|Rep:
           Protein-S-isoprenylcysteine O-methyltransferase -
           Saccharomyces cerevisiae (Baker's yeast)
          Length = 239

 Score = 37.5 bits (83), Expect = 0.20
 Identities = 18/63 (28%), Positives = 35/63 (55%)
 Frame = -1

Query: 531 SLHSVRSSHSRAIRTKSSSEWVLIG*RPKHWSWSWSKHEVRRGSWWMIKRSRTLVVRPIS 352
           ++H+   S S  ++TK  S+ VL+    K   +SWS+H    G +W    ++ L++ P+S
Sbjct: 139 AMHTAGHSFSHIVKTKKESDHVLV----KTGVYSWSRHPSYLGFFWWAIGTQLLLLNPLS 194

Query: 351 PIV 343
            ++
Sbjct: 195 LVI 197


>UniRef50_Q875B9 Cluster: Part of an hypothetical protein Pa5D0005;
           n=5; Pezizomycotina|Rep: Part of an hypothetical protein
           Pa5D0005 - Podospora anserina
          Length = 154

 Score = 36.3 bits (80), Expect = 0.47
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 447 KHWSWSWSKHEVRRGSW 397
           +HW W W+ H+VRRG W
Sbjct: 118 QHWQWRWNVHKVRRGDW 134


>UniRef50_Q9FYL8 Cluster: F21J9.11; n=1; Arabidopsis thaliana|Rep:
           F21J9.11 - Arabidopsis thaliana (Mouse-ear cress)
          Length = 191

 Score = 33.1 bits (72), Expect = 4.4
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
 Frame = +2

Query: 314 ITNTAMHLEITMGDIGLTTKVLDRLIIHQDPLRTSC-LDQDQDQCLGLYP-IKTHSEEDL 487
           I  TA+ L+    DI +++K L RLI     + +SC LD D+   LGL   I+  ++ D 
Sbjct: 89  IIETAVSLQFLAKDIDISSKALGRLISEVSNVESSCALDGDR---LGLGKIIRVSTKTDA 145

Query: 488 VRMALLC 508
              A+LC
Sbjct: 146 SNSAILC 152


>UniRef50_UPI0001555097 Cluster: PREDICTED: hypothetical protein;
           n=1; Ornithorhynchus anatinus|Rep: PREDICTED:
           hypothetical protein - Ornithorhynchus anatinus
          Length = 545

 Score = 32.7 bits (71), Expect = 5.8
 Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
 Frame = +2

Query: 395 HQDPLRTSC---LDQDQDQCLGLYPIKTHSEEDLV-RMALLCEDL 517
           +Q+P+R  C   L +  DQC   +P +  S ED+V +++ LC++L
Sbjct: 484 YQEPVRGDCPQALKEITDQCRAYHPSERPSAEDIVDKLSALCDEL 528


>UniRef50_A6LGL8 Cluster: Putative outer membrane protein, probably
            involved in nutrient binding; n=1; Parabacteroides
            distasonis ATCC 8503|Rep: Putative outer membrane
            protein, probably involved in nutrient binding -
            Parabacteroides distasonis (strain ATCC 8503 / DSM 20701
            / NCTC11152)
          Length = 1158

 Score = 32.7 bits (71), Expect = 5.8
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
 Frame = +1

Query: 208  MSIPFYKMNSREEYEMNEDCGWTEEP-----PRLPRRKIRNN----EYSNAFGNYNGGYW 360
            +++PF   N+   YE   +  WT E      PR+ +   +NN    EY N FG Y+  +W
Sbjct: 1024 VTVPFRLNNTNVSYEFFNNY-WTPERQDARYPRITQSPYKNNTTNSEYDNGFGPYSSSFW 1082


>UniRef50_A2YBK4 Cluster: Putative uncharacterized protein; n=1;
           Oryza sativa (indica cultivar-group)|Rep: Putative
           uncharacterized protein - Oryza sativa subsp. indica
           (Rice)
          Length = 312

 Score = 32.3 bits (70), Expect = 7.7
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -1

Query: 453 RPKHWSWSWSKHEVRRGSWWMIKRSRTLVVRPIS 352
           RP  W W W+    RR  W   +R R   VRP+S
Sbjct: 200 RPWLWGWRWTSRRKRRSLW--RRRRRAAGVRPVS 231


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 535,173,369
Number of Sequences: 1657284
Number of extensions: 10301816
Number of successful extensions: 27778
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 26876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27753
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 36238783989
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)