Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_J23
         (552 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.01c |||conserved protein|Schizosaccharomyces pombe|chr 1...    28   0.80 
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c...    26   4.2  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   5.6  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    25   9.8  

>SPAC6G9.01c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 95

 Score = 28.3 bits (60), Expect = 0.80
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 415 SSEGVLVDDQTVQDLGRQTNIPHCNFQMHCC 323
           + EG LV D+   ++G+    P C F   CC
Sbjct: 64  TEEGFLVYDEEELNIGQGGGTPDCPFDCQCC 94


>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 202 SIMSIPFYKMNSREEYEMNED 264
           SI S P  K  SRE++E NED
Sbjct: 366 SIRSSPKSKKRSREDFEENED 386


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -1

Query: 180 MNCFNLYNVITDFFQY*MSTLQFRSLNKN 94
           +NC++L NV+ ++       L F+ +N+N
Sbjct: 415 LNCYSLLNVLANYVVVFKDRLIFQEINQN 443


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = -2

Query: 494 SGPNPLPNGF 465
           +GP+PLPNGF
Sbjct: 655 AGPSPLPNGF 664


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,283,255
Number of Sequences: 5004
Number of extensions: 46081
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)