Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_J23
         (552 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0162 + 1138420-1138640,1138788-1138830,1139449-1140971,114...    31   0.46 
04_04_1275 + 32321161-32321285,32321849-32322071,32322187-323223...    29   3.3  
02_04_0157 + 20388761-20388763,20389807-20389935,20390206-203903...    27   7.5  
02_01_0594 - 4413016-4413091,4413201-4413268,4413387-4413482,441...    27   10.0 

>07_01_0162 +
           1138420-1138640,1138788-1138830,1139449-1140971,
           1141770-1142063,1142145-1142337,1142624-1142694,
           1142781-1144200
          Length = 1254

 Score = 31.5 bits (68), Expect = 0.46
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = -1

Query: 534 NSLHSV--RSSHSRAIRTKSSSEWVLIG*RPKHWSWS-WSKHEVRRGSWWMI 388
           +S H V  RS H  A     +    + G RP HW  S   +   RRG WW++
Sbjct: 520 SSAHEVFWRSCHGVAYLCMENVVTEMAGCRPTHWPRSALVRQRRRRGGWWLV 571


>04_04_1275 +
           32321161-32321285,32321849-32322071,32322187-32322309,
           32322391-32322519,32322939-32323024,32323233-32323356,
           32323531-32323579,32323808-32323890,32323975-32324042,
           32324187-32324264,32324460-32324547,32324640-32324756,
           32324844-32325176
          Length = 541

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = -3

Query: 280 LQSSHNLHSFHILHGCSFCRTE-YS*C*NRYWNVYELFQSIQRYYRFFS 137
           L+  H+LH+FH + G      E Y      +WN + +    Q  Y F S
Sbjct: 250 LELPHSLHAFHRVSGSDSLNMEGYHTYRGGFWNYFSMGMDAQVSYEFHS 298


>02_04_0157 + 20388761-20388763,20389807-20389935,20390206-20390349,
            20390690-20390835,20390915-20391071,20391312-20391370,
            20391466-20391664,20392232-20392381,20392471-20392607,
            20392717-20392863,20392975-20393076,20395655-20395712,
            20395816-20395917,20396236-20396273,20396409-20396535,
            20397092-20397259,20397356-20397487,20400222-20400331,
            20400400-20400460,20400929-20401106,20401194-20401399,
            20401552-20401671,20402523-20402621,20404177-20404386,
            20404704-20404843,20404945-20405053,20405351-20405431,
            20405523-20405693,20405825-20405974,20407029-20407202,
            20407453-20407479,20407688-20407758,20407843-20407942,
            20408305-20408361,20409457-20409513,20409656-20409736,
            20410336-20410421,20410535-20410649
          Length = 1466

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +2

Query: 275  LKSHLDFREER*GITNTAMHLEITMGDIGLTTKVLDRLIIHQDPLRT 415
            LK   D   +  G+TNT + L+  + ++ L  +VL +  + + P+RT
Sbjct: 1022 LKKATDAESKINGLTNTMLSLQEKLTNMELENQVLRQQALFRSPVRT 1068


>02_01_0594 -
           4413016-4413091,4413201-4413268,4413387-4413482,
           4413600-4413689,4413760-4413886,4413983-4414038,
           4414203-4414379,4414464-4415057
          Length = 427

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -1

Query: 438 SWSWSKHEVRRGSWWMIKRSRTLVVRPISPIVISKCIAV 322
           +W  S +E    S W    +R L+ RP+ P+ + +C  +
Sbjct: 137 AWDLSDNEAAPASSWATLPNRALLCRPL-PLDVGRCTCI 174


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,051,692
Number of Sequences: 37544
Number of extensions: 273853
Number of successful extensions: 655
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)