Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_J23
         (552 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g24450.1 68414.m03080 ribonuclease III family protein contain...    33   0.13 
At1g19030.1 68414.m02369 hypothetical protein                          29   1.6  
At3g15050.1 68416.m01904 calmodulin-binding family protein simil...    29   2.1  
At3g57340.2 68416.m06383 DNAJ heat shock N-terminal domain-conta...    29   2.7  
At3g57340.1 68416.m06382 DNAJ heat shock N-terminal domain-conta...    29   2.7  
At2g16090.1 68415.m01845 zinc finger protein-related contains si...    27   8.3  

>At1g24450.1 68414.m03080 ribonuclease III family protein contains
           similarity to Swiss-Prot:P51837 ribonuclease III (EC
           3.1.26.3) (RNase III) [Coxiella burnetii]
          Length = 191

 Score = 33.1 bits (72), Expect = 0.13
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
 Frame = +2

Query: 314 ITNTAMHLEITMGDIGLTTKVLDRLIIHQDPLRTSC-LDQDQDQCLGLYP-IKTHSEEDL 487
           I  TA+ L+    DI +++K L RLI     + +SC LD D+   LGL   I+  ++ D 
Sbjct: 89  IIETAVSLQFLAKDIDISSKALGRLISEVSNVESSCALDGDR---LGLGKIIRVSTKTDA 145

Query: 488 VRMALLC 508
              A+LC
Sbjct: 146 SNSAILC 152


>At1g19030.1 68414.m02369 hypothetical protein
          Length = 398

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 471 WVLIG*RPKHWSWSWSKHEVRRGSWWMIKRSRT 373
           W ++  R   W     K+ +RRGS+W++K + T
Sbjct: 121 WRILSARRSLWVELVKKYLIRRGSFWLVKENTT 153


>At3g15050.1 68416.m01904 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 259

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 441 WSWSWSKHEVRRGSWWMIKRSRTLVVRPISP 349
           W WSW +  +    W +  R++  VV+PI P
Sbjct: 199 WGWSWKERWIAARPWEI--RAQCYVVKPIKP 227


>At3g57340.2 68416.m06383 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|Q9QYI4 DnaJ
           homolog subfamily B member 12 Mus musculus; contains
           Pfam profile PF00226 DnaJ domain
          Length = 367

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +1

Query: 187 SNTGFSIMSIPFYKMNSREEYEMNEDCGWTEEPPRLPRRKIRNNEYSNAFGNYNGGYWSD 366
           S   F  +S  F  + S +E     D   ++EP   PRR  R+N        +NGGY+ +
Sbjct: 150 SEEAFKSVSKAFQCL-SNDEARKKYDVSGSDEPIYQPRRSARSN-------GFNGGYYYE 201

Query: 367 DQ 372
           D+
Sbjct: 202 DE 203


>At3g57340.1 68416.m06382 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|Q9QYI4 DnaJ
           homolog subfamily B member 12 Mus musculus; contains
           Pfam profile PF00226 DnaJ domain
          Length = 367

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +1

Query: 187 SNTGFSIMSIPFYKMNSREEYEMNEDCGWTEEPPRLPRRKIRNNEYSNAFGNYNGGYWSD 366
           S   F  +S  F  + S +E     D   ++EP   PRR  R+N        +NGGY+ +
Sbjct: 150 SEEAFKSVSKAFQCL-SNDEARKKYDVSGSDEPIYQPRRSARSN-------GFNGGYYYE 201

Query: 367 DQ 372
           D+
Sbjct: 202 DE 203


>At2g16090.1 68415.m01845 zinc finger protein-related contains
           similarity to zinc finger proteins and Pfam domain,
           PF01485: IBR domain
          Length = 593

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 166 IETVHKHSNTGFSIMSIPFYKMNSREEYEMNEDCGWT 276
           I  +  + + G    S  +   NS+E    + DCGWT
Sbjct: 508 IHNITPYRSNGIERASDFYSSQNSKEAVGQSSDCGWT 544


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,739,044
Number of Sequences: 28952
Number of extensions: 235163
Number of successful extensions: 625
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)