Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_J22
         (502 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces pom...    26   3.7  
SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo...    26   3.7  
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    25   6.4  
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    25   8.4  

>SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 197 E*RRHSSSFTTCGPRCGSKKNRSV 268
           E R H    T CGP   SKK+ SV
Sbjct: 107 EFRSHVQKITGCGPLSASKKDLSV 130


>SPAPB17E12.10c |||SAM-dependent
           methyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 336 TSPSQFQLRRSSHYHNRNILELCTLRFFLDP 244
           +S +   + RSS + N ++   C LRF+ +P
Sbjct: 9   SSSAYSAIARSSSWFNNSLFSSCLLRFYSNP 39


>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 106 VAMRSVLLFSTPNLFILLHNRIIA 35
           VA    L F+TP+L+ L H  ++A
Sbjct: 96  VASADALFFATPHLYKLAHEPLVA 119


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
 Frame = -1

Query: 166 VGGEEKLGLSFCVEP----SL*NRVAMRSVLLFSTPNLFILLHNRIIAFTSPILNHRL 5
           VG    +  SF V P     L N      V LFSTP+  I   N ++ F +P +  R+
Sbjct: 144 VGTRNTISFSFHVTPPALSKLLNDPKQYRVYLFSTPSETIGFGNCLMEFPTPQMELRI 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,823,039
Number of Sequences: 5004
Number of extensions: 36088
Number of successful extensions: 83
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)