Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_J22
         (502 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15253| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_17018| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  

>SB_15253| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 267

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -2

Query: 339 GTSPSQFQLRRSSHYHNRNILE 274
           G+SP+++Q+R+  H+H R  +E
Sbjct: 34  GSSPAKYQVRKGIHFHRRKPIE 55


>SB_17018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 706

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -1

Query: 142 LSFCVEPSL*NRVAMRSVLLFSTPNLFILLHNRIIA 35
           L FCV+    +RVAM S L+ S+P L      R +A
Sbjct: 621 LDFCVDHPTDDRVAMASTLIQSSPCLRTHFERRCLA 656


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,076,628
Number of Sequences: 59808
Number of extensions: 243847
Number of successful extensions: 472
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)