Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_J22
         (502 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084158-33|AAK68575.1|   83|Caenorhabditis elegans Hypothetical...    32   0.27 
AF016674-6|AAB66129.1|  530|Caenorhabditis elegans Hypothetical ...    29   1.9  
Z81479-3|CAB03942.1|  283|Caenorhabditis elegans Hypothetical pr...    28   3.3  
Z81479-2|CAB03941.1|  283|Caenorhabditis elegans Hypothetical pr...    28   3.3  
AC024761-13|AAP13758.1|  353|Caenorhabditis elegans Peroxiredoxi...    28   4.4  
AC024761-12|AAM97969.1|  387|Caenorhabditis elegans Peroxiredoxi...    28   4.4  
Z98853-7|CAB57906.1| 1675|Caenorhabditis elegans Hypothetical pr...    27   7.6  
Z75530-10|CAA99796.2| 1675|Caenorhabditis elegans Hypothetical p...    27   7.6  
U42848-2|AAA83608.2|  315|Caenorhabditis elegans Hypothetical pr...    27   7.6  

>AC084158-33|AAK68575.1|   83|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.3 protein.
          Length = 83

 Score = 31.9 bits (69), Expect = 0.27
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +3

Query: 267 YKVPEYFCYDNVSFFEAEIEMAKYRLPQPS 356
           YK  EY  +D  S+  AEI M K R+ QPS
Sbjct: 42  YKCDEYLKFDKYSYAHAEITMNKDRVVQPS 71


>AF016674-6|AAB66129.1|  530|Caenorhabditis elegans Hypothetical
           protein C03H5.6 protein.
          Length = 530

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -2

Query: 354 KVVAIGTSPSQFQLRRSSHYHNRNILELCTLRFFLDPHR 238
           K+V + + P  F +RR+ ++   N +E    RFF DP++
Sbjct: 395 KIVTMTSIPKAFNIRRTQNFDFENKIE--RFRFFSDPNK 431


>Z81479-3|CAB03942.1|  283|Caenorhabditis elegans Hypothetical
           protein C34F6.3 protein.
          Length = 283

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +3

Query: 219 ASQPVGPGVDPKKTG-AYKVPEYFCYD 296
           A QP  PG D  + G  YK PE FC+D
Sbjct: 113 AGQPGAPGADADEQGFHYKAPE-FCFD 138


>Z81479-2|CAB03941.1|  283|Caenorhabditis elegans Hypothetical
           protein C34F6.2 protein.
          Length = 283

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +3

Query: 219 ASQPVGPGVDPKKTG-AYKVPEYFCYD 296
           A QP  PG D  + G  YK PE FC+D
Sbjct: 113 AGQPGAPGADADEQGFHYKAPE-FCFD 138


>AC024761-13|AAP13758.1|  353|Caenorhabditis elegans Peroxiredoxin
           protein 6, isoform c protein.
          Length = 353

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = -1

Query: 190 LTSGIVEFVGGEEKLGLSFCVEPSL*NRVAMRSVLLFSTPNLFILLHNRIIAFTSPILNH 11
           +TSG VE    E K G   C+ P       +R  L FS PN++ +L  + + F   I+  
Sbjct: 177 ITSGTVEECTEELKEGNLLCIAPG-----GVREAL-FSDPNVYDILWGKRLGFAKVIIGS 230

Query: 10  R 8
           +
Sbjct: 231 K 231


>AC024761-12|AAM97969.1|  387|Caenorhabditis elegans Peroxiredoxin
           protein 6, isoform a protein.
          Length = 387

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = -1

Query: 190 LTSGIVEFVGGEEKLGLSFCVEPSL*NRVAMRSVLLFSTPNLFILLHNRIIAFTSPILNH 11
           +TSG VE    E K G   C+ P       +R  L FS PN++ +L  + + F   I+  
Sbjct: 177 ITSGTVEECTEELKEGNLLCIAPG-----GVREAL-FSDPNVYDILWGKRLGFAKVIIGS 230

Query: 10  R 8
           +
Sbjct: 231 K 231


>Z98853-7|CAB57906.1| 1675|Caenorhabditis elegans Hypothetical protein
            C47E8.8 protein.
          Length = 1675

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 285  FCYDNVSFFEAEIEMAKYRLPQPS 356
            F Y+NV++ +AE     Y  P+P+
Sbjct: 1521 FSYENVAYTQAEFSSTTYACPEPT 1544


>Z75530-10|CAA99796.2| 1675|Caenorhabditis elegans Hypothetical
            protein C47E8.8 protein.
          Length = 1675

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 285  FCYDNVSFFEAEIEMAKYRLPQPS 356
            F Y+NV++ +AE     Y  P+P+
Sbjct: 1521 FSYENVAYTQAEFSSTTYACPEPT 1544


>U42848-2|AAA83608.2|  315|Caenorhabditis elegans Hypothetical
          protein C31H1.5 protein.
          Length = 315

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/27 (48%), Positives = 21/27 (77%)
 Frame = -1

Query: 88 LLFSTPNLFILLHNRIIAFTSPILNHR 8
          +LF+ P L +LLH+ +IAF++P + HR
Sbjct: 1  MLFTLP-LLLLLHS-VIAFSTPEVQHR 25


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,982,089
Number of Sequences: 27780
Number of extensions: 198690
Number of successful extensions: 465
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)