Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_J22
         (502 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g68160.1 68414.m07786 expressed protein                             28   3.1  
At5g07670.1 68418.m00878 F-box family protein similar to unknown...    27   7.1  
At5g04930.1 68418.m00521 phospholipid-transporting ATPase 1 / am...    27   9.4  
At4g12980.1 68417.m02027 auxin-responsive protein, putative simi...    27   9.4  
At1g54560.1 68414.m06222 myosin, putative similar to myosin GI:4...    27   9.4  
At1g08730.1 68414.m00969 myosin heavy chain (PCR43) identical to...    27   9.4  

>At1g68160.1 68414.m07786 expressed protein
          Length = 273

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 188 QWIE*RRHSSSFTTCGPRCGSKKNRSVQSS 277
           +W+  +R  S    CG R  S K + V+SS
Sbjct: 124 RWLRRKRRKSEELNCGRRASSSKGKQVESS 153


>At5g07670.1 68418.m00878 F-box family protein similar to unknown
           protein (pir||C71419) ; similar to SKP1 interacting
           partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 476

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = -1

Query: 106 VAMRSVLLFSTPNLFILLHNRIIAFT 29
           V + S  L S PNL IL+++RI++FT
Sbjct: 126 VDLVSGCLISPPNLGILVNHRIVSFT 151


>At5g04930.1 68418.m00521 phospholipid-transporting ATPase 1 /
           aminophospholipid flippase 1 / magnesium-ATPase 1 (ALA1)
           nearly identical to SP|P98204 Phospholipid-transporting
           ATPase 1 (EC 3.6.3.1) (Aminophospholipid flippase 1)
           {Arabidopsis thaliana}; contains InterPro accession
           IPR005834: Haloacid dehalogenase-like hydrolase
          Length = 1158

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = -1

Query: 181 GIVEFVGGEEKLGLSFCVEPSL*NRVAMRSVLLFSTPNLFILLHNRIIAFTSPI 20
           G+V + GGE K  L+    PS  +R+  R  L     +LF+++   I A T+ +
Sbjct: 297 GVVVYAGGETKAMLNNSGAPSKRSRLETRMNLEIILLSLFLIVLCTIAAATAAV 350


>At4g12980.1 68417.m02027 auxin-responsive protein, putative similar
           to auxin-induced protein AIR12 GI:11357190 [Arabidopsis
           thaliana]
          Length = 394

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -2

Query: 201 YSIH*LQESSNLLEAKKN*DFRFVWSLH 118
           +SI  LQ  + LL  +K+  FRFVW+++
Sbjct: 298 FSIATLQMFAMLLRPRKDHKFRFVWNIY 325


>At1g54560.1 68414.m06222 myosin, putative similar to myosin
           GI:433663 from [Arabidopsis thaliana]
          Length = 1529

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 140 FVLCGAFTVKPSCNAERIALQHPKSIHFITQS 45
           ++LC A    P    E+  L HPK+ H++ QS
Sbjct: 261 YLLCAA----PQEELEKYKLGHPKTFHYLNQS 288


>At1g08730.1 68414.m00969 myosin heavy chain (PCR43) identical to
           myosin heavy chain PCR43 (PIR:T00727) [Arabidopsis
           thaliana]; similar to ESTs gb|R30087 and gb|AA394762
          Length = 1538

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 140 FVLCGAFTVKPSCNAERIALQHPKSIHFITQS 45
           ++LC A    P    E+  L HPK+ H++ QS
Sbjct: 266 YLLCAA----PQEEIEKYKLGHPKTFHYLNQS 293


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,290,436
Number of Sequences: 28952
Number of extensions: 180828
Number of successful extensions: 378
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)