Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_J19
         (786 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_242| Best HMM Match : AFP (HMM E-Value=0.45)                        34   0.11 
SB_36054| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_40330| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_27928| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_56062| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_15638| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_47695| Best HMM Match : DUF1106 (HMM E-Value=8.5)                   29   3.2  
SB_32642| Best HMM Match : IL10 (HMM E-Value=2.5)                      29   3.2  
SB_15149| Best HMM Match : HALZ (HMM E-Value=7.6)                      29   3.2  
SB_51071| Best HMM Match : SNF7 (HMM E-Value=0.16)                     29   4.3  
SB_45792| Best HMM Match : RVT_1 (HMM E-Value=3.5e-26)                 29   4.3  
SB_7402| Best HMM Match : Extensin_2 (HMM E-Value=2)                   29   5.6  
SB_1231| Best HMM Match : UCH (HMM E-Value=1e-13)                      29   5.6  
SB_30630| Best HMM Match : Hydrolase (HMM E-Value=2.5e-05)             28   7.5  
SB_25952| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_35373| Best HMM Match : Phage_T7_Capsid (HMM E-Value=4.6)           28   9.9  
SB_18245| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  
SB_14136| Best HMM Match : Exonuc_X-T (HMM E-Value=6e-25)              28   9.9  

>SB_242| Best HMM Match : AFP (HMM E-Value=0.45)
          Length = 147

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 22/76 (28%), Positives = 38/76 (50%)
 Frame = +3

Query: 390 YSCRPAARRSSREYSCSRLYSLLANRYTSICVGTQTHQSNVGSCESYLSSQYTAVTAGYL 569
           Y+C P+       Y+C+  Y+   + YT  C  + T  ++  S  SY S+     T  Y 
Sbjct: 2   YTCTPS-------YTCTTSYTSTTS-YT--CTTSYTSTTSYTSTTSYTSTTSYTPTTSYT 51

Query: 570 CSSSMETLTTFTSSPS 617
           C++S  + T++TS+ S
Sbjct: 52  CTTSYTSTTSYTSTTS 67



 Score = 28.7 bits (61), Expect = 5.6
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
 Frame = +3

Query: 429 YSCSRLYSLLANRYTSICVGTQTHQ----SNVGSCESYLSSQYTAVTAGYLCSSSMETLT 596
           Y+C+  Y+   + YTS    T T      ++  S  SY S+     T  Y C++S    T
Sbjct: 50  YTCTTSYTSTTS-YTSTTSYTSTTSYTSTTSYTSTTSYRSTPSYTPTPSYTCTTSYTCTT 108

Query: 597 TFTSSPS 617
           ++TS+ S
Sbjct: 109 SYTSTTS 115


>SB_36054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1267

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 17/56 (30%), Positives = 23/56 (41%)
 Frame = -3

Query: 721 HRPPAQXRHYVPFAPEVLVAQGQEAIDHERFITIPDGEEVNVVRVSIEEEQRYPAV 554
           HRPP    H +P +P          I H+     P   E +VV   ++   RYP V
Sbjct: 423 HRPPVPSSHLLPSSPTSTTQPSLSFIAHQ---PCPGQTESDVVGPILQHSSRYPRV 475


>SB_40330| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 153

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 20/67 (29%), Positives = 34/67 (50%)
 Frame = +3

Query: 417 SSREYSCSRLYSLLANRYTSICVGTQTHQSNVGSCESYLSSQYTAVTAGYLCSSSMETLT 596
           S+  Y+ +  Y+   + YTS    T T  ++  S  SY S+     T  Y C++S  + T
Sbjct: 52  STTSYTSTTSYTSTPS-YTSTTSYTST--TSYTSTTSYTSTTSYTSTTSYTCTTSYTSTT 108

Query: 597 TFTSSPS 617
           ++TS+ S
Sbjct: 109 SYTSTTS 115



 Score = 28.3 bits (60), Expect = 7.5
 Identities = 24/85 (28%), Positives = 38/85 (44%)
 Frame = +3

Query: 417 SSREYSCSRLYSLLANRYTSICVGTQTHQSNVGSCESYLSSQYTAVTAGYLCSSSMETLT 596
           S+  Y+ +  Y+   + YTS    T T  ++  S  SY S+     T  Y  ++S  + T
Sbjct: 22  STPSYTSTTSYTSTTS-YTSTSSYTST--TSYTSTTSYTSTTSYTSTPSYTSTTSYTSTT 78

Query: 597 TFTSSPSGIVMKRS*SIASCPCATS 671
           ++TS+ S        S  S  C TS
Sbjct: 79  SYTSTTSYTSTTSYTSTTSYTCTTS 103



 Score = 27.9 bits (59), Expect = 9.9
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +3

Query: 468 YTSICVGTQTHQSNVGSCESYLS-SQYTAVTAGYLCSSSMETLTTFTSSPS 617
           YTS    T T  ++  S  SY S S YT+ T+ Y  ++S  + T++TS+PS
Sbjct: 20  YTSTPSYTST--TSYTSTTSYTSTSSYTSTTS-YTSTTSYTSTTSYTSTPS 67


>SB_27928| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 20/67 (29%), Positives = 33/67 (49%)
 Frame = +3

Query: 417 SSREYSCSRLYSLLANRYTSICVGTQTHQSNVGSCESYLSSQYTAVTAGYLCSSSMETLT 596
           S+  Y+ +  Y+   + YTS    T T  ++  S  SY S+     T  Y C++S    T
Sbjct: 100 STTSYTSTTSYTSTTS-YTSTTSYTST--TSYTSTTSYTSTTSYTCTTSYTCTTSYTCTT 156

Query: 597 TFTSSPS 617
           ++TS+ S
Sbjct: 157 SYTSTTS 163



 Score = 28.7 bits (61), Expect = 5.6
 Identities = 19/67 (28%), Positives = 33/67 (49%)
 Frame = +3

Query: 417 SSREYSCSRLYSLLANRYTSICVGTQTHQSNVGSCESYLSSQYTAVTAGYLCSSSMETLT 596
           S+  Y+ +  Y+   + YTS    T T  ++  S  SY  +     T  Y C++S  + T
Sbjct: 106 STTSYTSTTSYTSTTS-YTSTTSYTST--TSYTSTTSYTCTTSYTCTTSYTCTTSYTSTT 162

Query: 597 TFTSSPS 617
           ++TS+ S
Sbjct: 163 SYTSTTS 169


>SB_56062| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 728

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +1

Query: 406 QRAGHRGNIRVHGSIHYLPTDIPAFALVHKPI 501
           +R G+ GN RV   +H +P  IP F L H PI
Sbjct: 691 KRVGY-GNARVTPYMHAVPYHIPQFILSHGPI 721


>SB_15638| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 404

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +1

Query: 406 QRAGHRGNIRVHGSIHYLPTDIPAFALVHKPI 501
           +R G+ GN RV   +H +P  IP F L H PI
Sbjct: 323 KRVGY-GNARVTPYMHAVPYHIPQFILSHGPI 353


>SB_47695| Best HMM Match : DUF1106 (HMM E-Value=8.5)
          Length = 248

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +1

Query: 406 QRAGHRGNIRVHGSIHYLPTDIPAFALVHKPI 501
           +R G+ GN RV   +H +P  IP F L H PI
Sbjct: 130 KRVGY-GNARVTPYMHAVPYHIPQFILSHGPI 160


>SB_32642| Best HMM Match : IL10 (HMM E-Value=2.5)
          Length = 544

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +1

Query: 406 QRAGHRGNIRVHGSIHYLPTDIPAFALVHKPI 501
           +R G+ GN RV   +H +P  IP F L H PI
Sbjct: 426 KRVGY-GNARVTPYMHAVPYHIPQFILSHGPI 456


>SB_15149| Best HMM Match : HALZ (HMM E-Value=7.6)
          Length = 328

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +1

Query: 406 QRAGHRGNIRVHGSIHYLPTDIPAFALVHKPI 501
           +R G+ GN RV   +H +P  IP F L H PI
Sbjct: 291 KRVGY-GNARVTPYMHAVPYHIPQFILSHGPI 321


>SB_51071| Best HMM Match : SNF7 (HMM E-Value=0.16)
          Length = 417

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
 Frame = -3

Query: 472 VYLLASNE*SREHEYS----RDDLRAAGL-QEYGLLQRLQHVVNNFRNPLSGYIHR 320
           + +L+ N+ S+ H  S      D+R A L Q  G++ +L H V N     S  +HR
Sbjct: 230 INVLSENQRSQSHSLSSMVDERDMRTADLGQLRGIVDQLSHQVANMERETSNQVHR 285


>SB_45792| Best HMM Match : RVT_1 (HMM E-Value=3.5e-26)
          Length = 600

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = +3

Query: 363 TC*SRCKSP-YSCRPAARRSSREYSCSRLYSLLANRYTSICVGTQTHQSNVGSCE--SYL 533
           TC S   SP  SC P   RSS  +  S L+S   +R  S+    Q H S   S +  S+L
Sbjct: 70  TCKSNPSSPKLSCEPTISRSSNPWGKSSLHSKWEHRKGSL-KRHQRHYSQAESAKHLSFL 128

Query: 534 SSQYT 548
           +S  T
Sbjct: 129 NSMRT 133


>SB_7402| Best HMM Match : Extensin_2 (HMM E-Value=2)
          Length = 267

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 21/87 (24%), Positives = 38/87 (43%)
 Frame = +3

Query: 357 FTTC*SRCKSPYSCRPAARRSSREYSCSRLYSLLANRYTSICVGTQTHQSNVGSCESYLS 536
           +T+  S   +P      +  S+  Y+C+  Y+   + YT  C  + T  ++     SY S
Sbjct: 179 YTSTTSYTPTPSYTSTPSYTSTTSYTCTTSYTSTTS-YT--CTTSYTSTTSYTPTTSYTS 235

Query: 537 SQYTAVTAGYLCSSSMETLTTFTSSPS 617
           +        Y  + S    T++TS+PS
Sbjct: 236 TTSYTSNPSYTPTPSYTPTTSYTSNPS 262


>SB_1231| Best HMM Match : UCH (HMM E-Value=1e-13)
          Length = 969

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +3

Query: 432 SCSRLYSLLANRYTSICVGTQTHQSNVGSCESYLSSQYTAVTAGYLCSSS--METLTTFT 605
           +C+R+    ++  T+    TQT  S +  C++Y      A T  +L +SS  + +    T
Sbjct: 618 NCTRVNDAYSDMDTTSNSSTQTKDSGIWGCDAYSVDTGEASTTRHLGNSSPNLPSQEPPT 677

Query: 606 SSPS 617
           SSPS
Sbjct: 678 SSPS 681


>SB_30630| Best HMM Match : Hydrolase (HMM E-Value=2.5e-05)
          Length = 839

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -1

Query: 450 NRAVNTNIPAMTCA-LRVCRNMGSCSGFST 364
           N  V T+IP   C  LR+   +GSC+GF++
Sbjct: 160 NLKVYTHIPLQVCQNLRLYSQIGSCTGFTS 189


>SB_25952| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 21/76 (27%), Positives = 38/76 (50%)
 Frame = +3

Query: 390 YSCRPAARRSSREYSCSRLYSLLANRYTSICVGTQTHQSNVGSCESYLSSQYTAVTAGYL 569
           Y+C   +  S+  Y+ +  Y+   + YTS    + T  ++  S  SY S+     T  Y 
Sbjct: 2   YTCT-TSYTSTTSYTHTTSYTHTTS-YTS--TPSYTCTTSYTSTPSYTSTTSYTPTPSYT 57

Query: 570 CSSSMETLTTFTSSPS 617
           C++S  + T++TS+ S
Sbjct: 58  CTTSYTSTTSYTSTTS 73


>SB_35373| Best HMM Match : Phage_T7_Capsid (HMM E-Value=4.6)
          Length = 414

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 434 VFTALFITCQQIYQHLRWYTNPSEQRW 514
           V  A++   ++   H  WYT+ +EQRW
Sbjct: 344 VLNAMWKVLKEYPPHPSWYTDQTEQRW 370


>SB_18245| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 96

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 434 VFTALFITCQQIYQHLRWYTNPSEQRW 514
           V  A++   ++   H  WYT+ +EQRW
Sbjct: 26  VLNAMWKVLKEYPPHPSWYTDQTEQRW 52


>SB_14136| Best HMM Match : Exonuc_X-T (HMM E-Value=6e-25)
          Length = 1597

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -3

Query: 712 PAQXRHYVPFAPEVLVAQ-GQEAIDHERFITIPDGE 608
           P Q RH+ P  P+ L ++ G  A+D E F+T+   E
Sbjct: 340 PGQSRHFTPLTPDELPSEGGLVALDAE-FVTLNQEE 374


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,654,582
Number of Sequences: 59808
Number of extensions: 460969
Number of successful extensions: 3100
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3084
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)