Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_J18
         (718 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14756| Best HMM Match : PIG-U (HMM E-Value=4.3)                     33   0.31 
SB_36665| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  

>SB_14756| Best HMM Match : PIG-U (HMM E-Value=4.3)
          Length = 194

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +2

Query: 491 IGIITVSDNYFRKFHTTLFLSI*KQFIIQHLYFFVTNILINFHLLNY 631
           +GIIT    Y   F   ++ +I  ++ I  L FF++ I IN  LL+Y
Sbjct: 63  VGIITGIKPYIAFFFIPVWSAIADKYRISRLLFFISTIAINLGLLSY 109


>SB_36665| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1277

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = -3

Query: 713 VLNDFYLMIHIIICCEWSLIMCSFYIICNLI 621
           V+ D  +   ++ CC  +L++CS   +C  +
Sbjct: 653 VITDGLMEARLVYCCSLALVICSILTVCKAL 683


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,870,665
Number of Sequences: 59808
Number of extensions: 306705
Number of successful extensions: 514
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)