Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_J18
         (718 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ658848-1|ABG45942.1|  207|Homo sapiens esophageal carcinoma NG...    32   2.4  
BC020565-1|AAH20565.1|  538|Homo sapiens solute carrier family 2...    32   2.4  
AK095783-1|BAC04626.1|  215|Homo sapiens protein ( Homo sapiens ...    31   4.1  

>DQ658848-1|ABG45942.1|  207|Homo sapiens esophageal carcinoma NGAL
           receptor transcript variant 3 protein.
          Length = 207

 Score = 31.9 bits (69), Expect = 2.4
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
 Frame = -3

Query: 173 IHRFYSRWPPISXPWPQP----GVNVS*ASQTNKAADRINTST 57
           +H  Y  +PP +  W QP    GV+V+ A+    AA R+ TST
Sbjct: 13  LHCHYGAFPPNASGWEQPPNASGVSVASAALAASAASRVATST 55


>BC020565-1|AAH20565.1|  538|Homo sapiens solute carrier family 22
           (organic cation transporter), member 17 protein.
          Length = 538

 Score = 31.9 bits (69), Expect = 2.4
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
 Frame = -3

Query: 173 IHRFYSRWPPISXPWPQP----GVNVS*ASQTNKAADRINTST 57
           +H  Y  +PP +  W QP    GV+V+ A+    AA R+ TST
Sbjct: 13  LHCHYGAFPPNASGWEQPPNASGVSVASAALAASAASRVATST 55


>AK095783-1|BAC04626.1|  215|Homo sapiens protein ( Homo sapiens
           cDNA FLJ38464 fis, clone FEBRA2021171. ).
          Length = 215

 Score = 31.1 bits (67), Expect = 4.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 152 WPPISXPWPQPGVNVS*ASQTNKAADRINTS 60
           W P+  P P PG     A+Q N+  +R+ TS
Sbjct: 141 WQPLPLPLPHPGWRTRGATQGNRGLERLRTS 171


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,125,511
Number of Sequences: 237096
Number of extensions: 1468207
Number of successful extensions: 2280
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2280
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8399192100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)