Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_J18
         (718 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g24470.2 68417.m03508 zinc finger (GATA type) protein ZIM (ZI...    29   4.1  
At4g24470.1 68417.m03507 zinc finger (GATA type) protein ZIM (ZI...    29   4.1  
At2g32920.1 68415.m04036 thioredoxin family protein similar to S...    28   7.1  

>At4g24470.2 68417.m03508 zinc finger (GATA type) protein ZIM (ZIM)
           identical to zinc-finger protein expressed in
           Inflorescence Meristem, ZIM gi:8918533 from [Arabidopsis
           thaliana]
          Length = 309

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -1

Query: 208 FVYSINGIFRGASIVSIVGGLRSLXPGPN-LE*TSAELHRPTRQRTESTQVPKR 50
           +V+   G  +  +++S++GG   L PGP  +E    + H P  +      +P+R
Sbjct: 93  YVFDAVGADKVDAVLSLLGGSTELAPGPQVMELAQQQNHMPVVEYQSRCSLPQR 146


>At4g24470.1 68417.m03507 zinc finger (GATA type) protein ZIM (ZIM)
           identical to zinc-finger protein expressed in
           Inflorescence Meristem, ZIM gi:8918533 from [Arabidopsis
           thaliana]
          Length = 309

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -1

Query: 208 FVYSINGIFRGASIVSIVGGLRSLXPGPN-LE*TSAELHRPTRQRTESTQVPKR 50
           +V+   G  +  +++S++GG   L PGP  +E    + H P  +      +P+R
Sbjct: 93  YVFDAVGADKVDAVLSLLGGSTELAPGPQVMELAQQQNHMPVVEYQSRCSLPQR 146


>At2g32920.1 68415.m04036 thioredoxin family protein similar to
           SP|Q15084 Protein disulfide isomerase A6 precursor (EC
           5.3.4.1) {Homo sapiens}; contains Pfam profile PF00085:
           Thioredoxin
          Length = 440

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +3

Query: 258 YRTPLTVLIVSTICFNSFE 314
           Y++PLT+L + TICF  F+
Sbjct: 2   YKSPLTLLTLLTICFGFFD 20


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,591,887
Number of Sequences: 28952
Number of extensions: 216659
Number of successful extensions: 445
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)