Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_J17
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc...    28   1.00 
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    27   1.7  
SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism...    26   5.3  
SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35 ...    25   7.0  

>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 721

 Score = 28.3 bits (60), Expect = 1.00
 Identities = 16/57 (28%), Positives = 33/57 (57%)
 Frame = +3

Query: 462 KATLDDGEKVPIILLDTQGAFDSESTVRDCATVFALSTMLSSVQIYNLSQNIQEDDL 632
           + TLD  +  PI  L  +GAF ++  + D +T+    +  +SV++YN +  +++ D+
Sbjct: 313 RETLDAIKASPI--LADEGAFYAKHLILDLSTLSPAVSGPNSVKVYNSAATLEKKDI 367


>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3

Query: 589 TDDSIVDRANTVAQSRTVDSLSKAPCVSNNIIGTFSPS 476
           TDD       T  + R + +L+K+P + N II + +PS
Sbjct: 458 TDDDFSLSRLTDDEEREIRALAKSPDIHNRIIASMAPS 495


>SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +3

Query: 468 TLDDGEKVPIILLDTQGAFDSESTVRDCATVFALSTMLSSVQIYNLSQNIQE 623
           TL +G+K+P I L T  +   E+    CA + A    + +  IY   + I E
Sbjct: 16  TLPNGDKIPSIGLGTWRSGKDETKNAVCAALKAGYRHIDTAHIYGNEKEIGE 67


>SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 315

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
 Frame = +2

Query: 41  PVINKLNMAENEGHKHRERYDH----EGEVTEKPAPAPRGPHGVQVVDTGPDHTFTLXRG 208
           P I +LNM +N  H H+   +H    E E     +P+  G    +++D    + +    G
Sbjct: 244 PSIEELNMRQNATHFHKTSDEHKDLNEDEELISSSPSEVGKRVFRLIDLSTGNVYRRDTG 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,375,560
Number of Sequences: 5004
Number of extensions: 45454
Number of successful extensions: 146
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)