Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_J17
(642 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0300 + 32967935-32968029,32968975-32969077,32969175-329692... 51 4e-09
07_01_0584 + 4345134-4345237,4346165-4346267,4346397-4346466,434... 53 2e-07
05_07_0116 - 27785083-27786123,27786201-27786278,27786364-277869... 48 8e-06
03_01_0210 + 1652040-1652186,1652446-1652853 31 0.78
06_01_0749 + 5599238-5600128 29 4.1
11_06_0131 - 20416257-20417635,20419525-20419905,20420703-20423415 28 5.5
08_02_0092 + 12265446-12265809,12266147-12266743,12266792-122668... 28 5.5
01_06_1573 - 38329476-38329591,38330535-38330871 28 5.5
04_01_0481 - 6302066-6303118 28 7.2
03_05_0855 + 28267231-28267603,28267725-28267966,28268071-282681... 28 7.2
11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008 27 9.6
11_08_0032 - 27807489-27807497,27807641-27807684,27808046-278081... 27 9.6
11_02_0065 - 7938007-7938393,7939292-7939435,7940597-7940665,794... 27 9.6
04_04_0378 - 24822436-24822521,24822623-24822738,24823010-248230... 27 9.6
>03_06_0300 +
32967935-32968029,32968975-32969077,32969175-32969244,
32969464-32969581,32969687-32969744,32969831-32969895,
32969990-32969996,32970087-32970147,32970757-32970776,
32970858-32970923,32971126-32971293,32971372-32971629,
32972098-32972310,32972824-32973099
Length = 525
Score = 51.2 bits (117), Expect(2) = 4e-09
Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Frame = +3
Query: 435 GILMWSEIFKATLDDGEKVPIILLDTQGAFDS--ESTVRDCATVFALSTMLSSVQIYNLS 608
GI +W + +D G KV ++ LDT+G F+S +S V D +FAL+T+LSSV IYNL
Sbjct: 90 GIWIWGTPVEMDID-GSKVSVLYLDTEG-FESVGKSNVYD-DRIFALATVLSSVLIYNLP 146
Query: 609 QNIQEDDLXHL 641
+ ++E D+ L
Sbjct: 147 ETVREADISRL 157
Score = 27.1 bits (57), Expect(2) = 4e-09
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 255 VVVISVAGAFRKGKSFLLDFFL 320
+ V+ V G +R GKSFLL+ L
Sbjct: 62 IAVVGVIGPYRSGKSFLLNQLL 83
>07_01_0584 +
4345134-4345237,4346165-4346267,4346397-4346466,
4346552-4346590,4346684-4346801,4346894-4346951,
4347031-4347095,4347281-4347341,4347678-4347779,
4348005-4348070,4348399-4348443,4348540-4348797,
4349289-4349501,4350103-4350411,4350461-4350613
Length = 587
Score = 52.8 bits (121), Expect = 2e-07
Identities = 44/131 (33%), Positives = 66/131 (50%), Gaps = 2/131 (1%)
Frame = +3
Query: 255 VVVISVAGAFRKGKSFLLDFFLRYMHYKYXXXXXXXXXXXSEQDPLQGFSWRGGSERDTT 434
+ ++V G +R GKSFLL+ L K GF + T
Sbjct: 65 IAAVAVIGPYRSGKSFLLNQLLSLTCNK-------------------GFGVGHMRDTKTK 105
Query: 435 GILMWSEIFKATLDDGEKVPIILLDTQGAFDS--ESTVRDCATVFALSTMLSSVQIYNLS 608
GI +W + ++ G KV ++ LDT+G F+S +S V D +FAL+T+LSS+ IYNL
Sbjct: 106 GIWVWGTPIELDVN-GSKVSVLYLDTEG-FESIGKSNVYD-DRIFALATVLSSILIYNLP 162
Query: 609 QNIQEDDLXHL 641
+ I+E D+ L
Sbjct: 163 ETIREADISRL 173
>05_07_0116 -
27785083-27786123,27786201-27786278,27786364-27786976,
27787128-27787213,27787316-27787438,27787600-27787734,
27787930-27788019,27788796-27788981,27789560-27789661,
27789787-27789900,27790010-27790153,27790260-27790325,
27790895-27791056,27791668-27791916
Length = 1062
Score = 47.6 bits (108), Expect = 8e-06
Identities = 27/71 (38%), Positives = 38/71 (53%)
Frame = +3
Query: 429 TTGILMWSEIFKATLDDGEKVPIILLDTQGAFDSESTVRDCATVFALSTMLSSVQIYNLS 608
T G+ MWS K T DG + ++LLDT+G + T +F+L+ +LSS+ IYN
Sbjct: 101 TKGLWMWSAPLKRTGLDGTEYNLVLLDTEGIDAYDQTGTYSIQIFSLAVLLSSMFIYNQM 160
Query: 609 QNIQEDDLXHL 641
I E L L
Sbjct: 161 GGIDEAALDRL 171
>03_01_0210 + 1652040-1652186,1652446-1652853
Length = 184
Score = 31.1 bits (67), Expect = 0.78
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +2
Query: 56 LNMAENEGHKHRERYDHEGEVTEKPAPAP 142
L A G H ERYD EG + +P P P
Sbjct: 131 LAAAAAAGSNHTERYDDEGRASARPPPPP 159
>06_01_0749 + 5599238-5600128
Length = 296
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +1
Query: 370 SVANRTPSRASAGEGAPRGTRPAYSCGPRYSKRRSMMVKR 489
S + R P+RA+A E A P + PR SK+RS +R
Sbjct: 2 SSSRRPPARAAATEAAADAALPLHPSSPR-SKKRSSSSRR 40
>11_06_0131 - 20416257-20417635,20419525-20419905,20420703-20423415
Length = 1490
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -3
Query: 493 GTFSPSSSVALNISDHMSMPVVSLSEPPRQLKPWRGSC 380
G+F LNI DH+++ V+ L E P+ LK + C
Sbjct: 729 GSFGSVYKGKLNIQDHVAVKVLKL-ENPKALKSFTAEC 765
>08_02_0092 +
12265446-12265809,12266147-12266743,12266792-12266861,
12267325-12267427
Length = 377
Score = 28.3 bits (60), Expect = 5.5
Identities = 9/32 (28%), Positives = 14/32 (43%)
Frame = -1
Query: 618 GCFARGCISERTTASWTERTRSHSLAPWIHCR 523
G CI + + W+ + S A W+ CR
Sbjct: 221 GSLGFACIEDSSLYVWSRKVNSEGAAEWVQCR 252
>01_06_1573 - 38329476-38329591,38330535-38330871
Length = 150
Score = 28.3 bits (60), Expect = 5.5
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -1
Query: 579 ASWTERTRSHSLAPWIHC 526
A+WT R R H L W+ C
Sbjct: 58 AAWTTRARQHGLEVWMRC 75
>04_01_0481 - 6302066-6303118
Length = 350
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +2
Query: 86 HRERYDHEGEVTEKPAPAPRGPHGVQVV 169
H + ++ KP P P GPH V +V
Sbjct: 304 HLHETERHSSLSIKPKPCPSGPHNVDLV 331
>03_05_0855 +
28267231-28267603,28267725-28267966,28268071-28268193,
28268507-28268623,28268739-28268921,28269017-28269158,
28269379-28269544,28270194-28270212
Length = 454
Score = 27.9 bits (59), Expect = 7.2
Identities = 21/70 (30%), Positives = 33/70 (47%)
Frame = +2
Query: 122 EKPAPAPRGPHGVQVVDTGPDHTFTLXRGSPQVSAPERRCQRQSRGRYISXRSLQERKVL 301
E P P+ G +VV+ G + + R Q P RR +R+ R I S + R ++
Sbjct: 62 EDPGPSDGGEGNGRVVEEGEEE---VVRRKEQ---PRRRQRRRPVWRRILFASKKTRSII 115
Query: 302 LIGLLPEIYA 331
++ L IYA
Sbjct: 116 ILNALTVIYA 125
>11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008
Length = 1058
Score = 27.5 bits (58), Expect = 9.6
Identities = 18/67 (26%), Positives = 33/67 (49%)
Frame = +3
Query: 417 SERDTTGILMWSEIFKATLDDGEKVPIILLDTQGAFDSESTVRDCATVFALSTMLSSVQI 596
+E + G+ + ++FK LDDG V I +L+ Q S +C V ++ + ++I
Sbjct: 750 NEDNLLGVGSFGKVFKGRLDDGLVVAIKILNMQVERAIRSFDAEC-HVLRMARHRNLIKI 808
Query: 597 YNLSQNI 617
N N+
Sbjct: 809 LNTCSNL 815
>11_08_0032 -
27807489-27807497,27807641-27807684,27808046-27808168,
27810770-27810983,27811382-27811530,27811719-27812618,
27812964-27814659
Length = 1044
Score = 27.5 bits (58), Expect = 9.6
Identities = 18/67 (26%), Positives = 33/67 (49%)
Frame = +3
Query: 417 SERDTTGILMWSEIFKATLDDGEKVPIILLDTQGAFDSESTVRDCATVFALSTMLSSVQI 596
+E + G+ + ++FK LDDG V I +L+ Q S +C V ++ + ++I
Sbjct: 695 NEDNLLGVGSFGKVFKGRLDDGLVVAIKILNMQVERAIRSFDAEC-HVLRMARHRNLIKI 753
Query: 597 YNLSQNI 617
N N+
Sbjct: 754 LNTCSNL 760
>11_02_0065 -
7938007-7938393,7939292-7939435,7940597-7940665,
7940762-7940809,7941488-7941584,7941688-7941767,
7941841-7941912,7942256-7942350,7943903-7943984,
7945176-7945209,7945255-7945262,7945657-7946058
Length = 505
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Frame = +2
Query: 80 HKHRERYDHEGEVTEKPAPAPRGPHGVQVVDTG---PDHT--FTLXRGSPQVS 223
H + + + +P P P+ P G G PD T F + RG PQ S
Sbjct: 441 HPAKNEQQQQAQPQPQPQPQPQPPAGANKQPPGPRMPDGTRGFAMGRGKPQTS 493
>04_04_0378 -
24822436-24822521,24822623-24822738,24823010-24823092,
24823772-24823918,24824004-24824051,24824153-24824353,
24824981-24825152,24825235-24825299,24825813-24825939,
24826436-24826528,24826608-24826696,24826804-24826950,
24827047-24827359,24827474-24828048
Length = 753
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -1
Query: 603 GCISERTTASWTERTRSHSLAPWIHCRRRLACLTILSVP 487
GC E++TAS R +H A +I ++ L L+IL P
Sbjct: 37 GCEIEQSTASQNSRESNHEKAQYILRKQGLLGLSILCHP 75
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,095,395
Number of Sequences: 37544
Number of extensions: 362623
Number of successful extensions: 1378
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1376
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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