Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_J17
(642 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37041| Best HMM Match : GBP (HMM E-Value=0) 112 2e-25
SB_36132| Best HMM Match : GBP (HMM E-Value=8.7e-28) 56 2e-08
SB_9614| Best HMM Match : GBP (HMM E-Value=1e-31) 41 0.001
SB_9615| Best HMM Match : GBP (HMM E-Value=2.8e-22) 40 0.002
SB_8501| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.46
SB_26857| Best HMM Match : Viral_NABP (HMM E-Value=2.6) 31 1.1
SB_58520| Best HMM Match : RVT_1 (HMM E-Value=0.035) 31 1.1
SB_48376| Best HMM Match : HMG-CoA_red (HMM E-Value=6.8e-11) 31 1.1
SB_39216| Best HMM Match : WD40 (HMM E-Value=1.1e-14) 29 3.2
SB_21966| Best HMM Match : DnaJ (HMM E-Value=5.30001e-40) 28 5.6
SB_21277| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_51878| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_41711| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_8432| Best HMM Match : IlvC (HMM E-Value=4) 28 7.4
SB_8335| Best HMM Match : Dehydrin (HMM E-Value=7.2) 28 7.4
SB_50408| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_9680| Best HMM Match : Ank (HMM E-Value=4e-20) 27 9.8
SB_9057| Best HMM Match : Nucleoplasmin (HMM E-Value=3.6) 27 9.8
SB_42147| Best HMM Match : Thioredoxin (HMM E-Value=0.3) 27 9.8
>SB_37041| Best HMM Match : GBP (HMM E-Value=0)
Length = 466
Score = 112 bits (270), Expect = 2e-25
Identities = 49/74 (66%), Positives = 62/74 (83%)
Frame = +3
Query: 378 EQDPLQGFSWRGGSERDTTGILMWSEIFKATLDDGEKVPIILLDTQGAFDSESTVRDCAT 557
E + L+GFSWRGGSERDTTGILMW++ + DGE+V ++L+DTQGAFDS STV+DCAT
Sbjct: 10 ETEALEGFSWRGGSERDTTGILMWNKPYICKRPDGEEVVVLLMDTQGAFDSSSTVKDCAT 69
Query: 558 VFALSTMLSSVQIY 599
+FALSTM SS Q++
Sbjct: 70 IFALSTMTSSTQLF 83
>SB_36132| Best HMM Match : GBP (HMM E-Value=8.7e-28)
Length = 368
Score = 56.4 bits (130), Expect = 2e-08
Identities = 28/72 (38%), Positives = 44/72 (61%)
Frame = +3
Query: 426 DTTGILMWSEIFKATLDDGEKVPIILLDTQGAFDSESTVRDCATVFALSTMLSSVQIYNL 605
+T GI MW + K L DG++V ++ LDT+G + + A VFA++T+LSS IYN
Sbjct: 154 ETMGIWMWGKPLKIKLQDGQEVALVFLDTEGFAATNVSESYDAKVFAVATLLSSYLIYNS 213
Query: 606 SQNIQEDDLXHL 641
+ I + D+ +L
Sbjct: 214 VKIIDQGDIDYL 225
>SB_9614| Best HMM Match : GBP (HMM E-Value=1e-31)
Length = 708
Score = 40.7 bits (91), Expect = 0.001
Identities = 38/129 (29%), Positives = 61/129 (47%)
Frame = +3
Query: 216 KSLLLKEDVRDRAVVVISVAGAFRKGKSFLLDFFLRYMHYKYXXXXXXXXXXXSEQDPLQ 395
++L L D++ V V+S+AG RKGKS+++ E PL
Sbjct: 38 RALKLLRDIKG-PVCVVSIAGPCRKGKSYIIS----------------KAFNLGEIFPLG 80
Query: 396 GFSWRGGSERDTTGILMWSEIFKATLDDGEKVPIILLDTQGAFDSESTVRDCATVFALST 575
+ +T GI ++ K +G +V ++LLD++G + + D +VF LS
Sbjct: 81 HLM-----DPETMGIWLYVVDQKFKDANGREVTVVLLDSEGINATGAQKSDDHSVFTLSV 135
Query: 576 MLSSVQIYN 602
+LSSV IYN
Sbjct: 136 LLSSVMIYN 144
>SB_9615| Best HMM Match : GBP (HMM E-Value=2.8e-22)
Length = 621
Score = 39.5 bits (88), Expect = 0.002
Identities = 39/131 (29%), Positives = 56/131 (42%), Gaps = 2/131 (1%)
Frame = +3
Query: 255 VVVISVAGAFRKGKSFLLDFFLRYMHYKYXXXXXXXXXXXSEQDPLQGFSWRGGSERD-- 428
V V+SV G RKGKSF+L E PL G E D
Sbjct: 148 VCVVSVTGPCRKGKSFIL----------------AKSFTEKEVFPL-------GDELDPK 184
Query: 429 TTGILMWSEIFKATLDDGEKVPIILLDTQGAFDSESTVRDCATVFALSTMLSSVQIYNLS 608
T G+ +W + D G+ ++L+D++G S+S ++ + L+ +LSSV IYN
Sbjct: 185 TMGLWLWVVPKQFRDDKGQPFTVVLVDSEGTKASQSQQKEDDVIVTLTLLLSSVLIYNSE 244
Query: 609 QNIQEDDLXHL 641
DL L
Sbjct: 245 GVPTASDLEQL 255
>SB_8501| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 543
Score = 31.9 bits (69), Expect = 0.46
Identities = 23/67 (34%), Positives = 30/67 (44%)
Frame = +2
Query: 80 HKHRERYDHEGEVTEKPAPAPRGPHGVQVVDTGPDHTFTLXRGSPQVSAPERRCQRQSRG 259
H+HR RY E + KP+P+P GV P T PQV AP +R Q
Sbjct: 141 HRHRNRY--RNETSNKPSPSPGARSGV----AKPTRT-------PQVQAPPQRAAAQRAT 187
Query: 260 RYISXRS 280
R ++ S
Sbjct: 188 RNLNADS 194
>SB_26857| Best HMM Match : Viral_NABP (HMM E-Value=2.6)
Length = 526
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/43 (32%), Positives = 27/43 (62%)
Frame = +3
Query: 402 SWRGGSERDTTGILMWSEIFKATLDDGEKVPIILLDTQGAFDS 530
+++ G +T + ++I +A +DDG+ V ++LLD AFD+
Sbjct: 446 AYKKGHSTETALTRIQNDILRA-IDDGQSVILVLLDLSAAFDT 487
>SB_58520| Best HMM Match : RVT_1 (HMM E-Value=0.035)
Length = 556
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/43 (32%), Positives = 27/43 (62%)
Frame = +3
Query: 402 SWRGGSERDTTGILMWSEIFKATLDDGEKVPIILLDTQGAFDS 530
+++ G +T + ++I +A +DDG+ V ++LLD AFD+
Sbjct: 367 AYKKGHSTETALTRIQNDILRA-IDDGQSVILVLLDLSAAFDT 408
>SB_48376| Best HMM Match : HMG-CoA_red (HMM E-Value=6.8e-11)
Length = 135
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/47 (31%), Positives = 28/47 (59%)
Frame = +3
Query: 477 DGEKVPIILLDTQGAFDSESTVRDCATVFALSTMLSSVQIYNLSQNI 617
DG++ + + T+G + ST R C+ + L T +SS+ N+S+N+
Sbjct: 52 DGQQFFVPMATTEGCLVA-STNRGCSALMVLKTTVSSLSELNISKNL 97
>SB_39216| Best HMM Match : WD40 (HMM E-Value=1.1e-14)
Length = 867
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +2
Query: 98 YDHEGEVTEK-PAPAPRGPHGVQVVDTGPDHTFTLXRGSPQVS 223
YD +VT P P G G +V+ GPD L GS ++S
Sbjct: 180 YDPRAQVTPVLEGPGPEGSRGGRVIWGGPDGNMLLVCGSDKMS 222
>SB_21966| Best HMM Match : DnaJ (HMM E-Value=5.30001e-40)
Length = 351
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Frame = +2
Query: 83 KHRERYDHEGEVTEKPAPAPR--GPHGVQVVDTGPDH-TFTLXRG 208
K +E YD GE K P P+ G HG + GP TFT G
Sbjct: 59 KKKEIYDQYGEEGLKGTPPPQNGGGHGFSGANFGPGFTTFTYTSG 103
>SB_21277| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 414
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 80 VLRFQPYSIYLLQDTNFTEHSDVKXF 3
VLRF Y + + D FT+ SD K F
Sbjct: 193 VLRFDDYPVCVAVDETFTKRSDKKTF 218
>SB_51878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 150
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -3
Query: 538 VDSLSKAPCVSNNIIGTFSPSSSVALNISDHMSMPVVSLSEPPRQL 401
VD L + +N + + SPS ++A+ I +S V PP Q+
Sbjct: 90 VDVLKNKFFLKSNALTSLSPSQAIAVLIRKLVSQKYVEFKTPPSQI 135
>SB_41711| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1662
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +2
Query: 59 NMAENEGHKHRERYDHEGEVTEKPAPAPRGP 151
N A H RER+ +G PA PR P
Sbjct: 108 NPASLSSHSRRERHQGKGSPMSSPAMRPRSP 138
>SB_8432| Best HMM Match : IlvC (HMM E-Value=4)
Length = 221
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +3
Query: 402 SWRGGSERDTTGILMWSEIFKATLDDGEKVPIILLDTQGAF 524
+++ G +T + ++I +A +DDG+ V ++LLD AF
Sbjct: 25 AYKKGHSTETALTRVQNDILRA-IDDGQSVILVLLDLSAAF 64
>SB_8335| Best HMM Match : Dehydrin (HMM E-Value=7.2)
Length = 531
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Frame = +2
Query: 59 NMAENEGHKHR--ERYDHEGEVTEKPAPAPRGPHGVQVVDTGPDHTFTLXRGSPQVSAPE 232
++ H+ R ER H+ ++ R V+ D P+ + G P+ +PE
Sbjct: 216 DLERTRDHRDRDFERSRHDRRERDREVERARDQKDVRARDRDPERSRDYRDGRPRNRSPE 275
Query: 233 R-RCQRQSRGR 262
R R QR +R R
Sbjct: 276 RQRDQRDARPR 286
>SB_50408| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +3
Query: 150 PTVSRSSTPAPTIRSPXYEEALKSLLLKEDVRDRAV 257
P+ + SSTPAP SP EAL++ + ++ + R++
Sbjct: 466 PSATPSSTPAPGAASPATIEALQAEVTQQGEKVRSL 501
>SB_9680| Best HMM Match : Ank (HMM E-Value=4e-20)
Length = 1243
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Frame = -2
Query: 146 HAVP---APASLSLLPHGHSVPDVYVL 75
HAVP A + +PH H+VPD++ L
Sbjct: 1047 HAVPDIHAVPDIHAMPHVHAVPDIHTL 1073
>SB_9057| Best HMM Match : Nucleoplasmin (HMM E-Value=3.6)
Length = 479
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +2
Query: 68 ENEGHKHRERYDHEGEVTEKPAPAPRGPHGVQVVD 172
E E + E D E VT P P P P+ QVVD
Sbjct: 356 EEEEEEEEEEVDREA-VTPPPPPQPPPPNEQQVVD 389
>SB_42147| Best HMM Match : Thioredoxin (HMM E-Value=0.3)
Length = 787
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/43 (30%), Positives = 28/43 (65%)
Frame = +3
Query: 402 SWRGGSERDTTGILMWSEIFKATLDDGEKVPIILLDTQGAFDS 530
++R +TT + + ++I +A +D+ ++V ++LLD AFD+
Sbjct: 70 AYRRFHSTETTLVCVQNDILRA-MDEEKEVILVLLDLSAAFDT 111
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,733,737
Number of Sequences: 59808
Number of extensions: 384871
Number of successful extensions: 1399
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1395
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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