Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_J17
(642 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF303255-1|AAG50213.1| 573|Caenorhabditis elegans putative guan... 183 1e-46
AC024817-8|AAU05551.1| 535|Caenorhabditis elegans Hypothetical ... 183 1e-46
AC024817-7|AAK68527.1| 573|Caenorhabditis elegans Hypothetical ... 183 1e-46
Z95559-2|CAB09000.3| 520|Caenorhabditis elegans Hypothetical pr... 143 1e-34
U56963-11|AAB38127.1| 342|Caenorhabditis elegans Serpentine rec... 30 1.2
AL021386-3|CAA16167.1| 330|Caenorhabditis elegans Hypothetical ... 29 3.7
U88173-6|AAM15575.1| 1282|Caenorhabditis elegans Hypothetical pr... 28 6.5
U88173-5|AAM15574.1| 1280|Caenorhabditis elegans Hypothetical pr... 28 6.5
U46669-2|AAZ86797.1| 429|Caenorhabditis elegans Hypothetical pr... 28 6.5
U46669-1|AAZ86798.1| 413|Caenorhabditis elegans Hypothetical pr... 28 6.5
AF332207-1|AAK17978.1| 378|Caenorhabditis elegans nuclear recep... 28 6.5
AF016445-12|AAC69062.1| 374|Caenorhabditis elegans Nuclear horm... 28 6.5
>AF303255-1|AAG50213.1| 573|Caenorhabditis elegans putative
guanylate-binding protein protein.
Length = 573
Score = 183 bits (445), Expect = 1e-46
Identities = 91/151 (60%), Positives = 110/151 (72%), Gaps = 6/151 (3%)
Frame = +3
Query: 207 EALKSLLLKEDVRDRAVVVISVAGAFRKGKSFLLDFFLRYMHYK------YXXXXXXXXX 368
E L+ +LL V D+ V VI VAGA+RKGKSFLL+FFLRY+ ++
Sbjct: 51 ELLEKILLDPKVADKKVAVIGVAGAYRKGKSFLLNFFLRYLTWRSKADKVMGEVELDNSQ 110
Query: 369 XXSEQDPLQGFSWRGGSERDTTGILMWSEIFKATLDDGEKVPIILLDTQGAFDSESTVRD 548
S PL GFSWRGGSERDT GIL+WSE F +GE++ ++L+DTQGAFDS+STV+D
Sbjct: 111 WMSPNSPLSGFSWRGGSERDTNGILIWSEPFIMKDKNGEEIAVLLMDTQGAFDSQSTVKD 170
Query: 549 CATVFALSTMLSSVQIYNLSQNIQEDDLXHL 641
CAT+FALSTM+SSVQIYNLSQNIQEDDL HL
Sbjct: 171 CATIFALSTMISSVQIYNLSQNIQEDDLQHL 201
>AC024817-8|AAU05551.1| 535|Caenorhabditis elegans Hypothetical
protein Y54G2A.2b protein.
Length = 535
Score = 183 bits (445), Expect = 1e-46
Identities = 91/151 (60%), Positives = 110/151 (72%), Gaps = 6/151 (3%)
Frame = +3
Query: 207 EALKSLLLKEDVRDRAVVVISVAGAFRKGKSFLLDFFLRYMHYK------YXXXXXXXXX 368
E L+ +LL V D+ V VI VAGA+RKGKSFLL+FFLRY+ ++
Sbjct: 51 ELLEKILLDPKVADKKVAVIGVAGAYRKGKSFLLNFFLRYLTWRSKADKVMGEVELDNSQ 110
Query: 369 XXSEQDPLQGFSWRGGSERDTTGILMWSEIFKATLDDGEKVPIILLDTQGAFDSESTVRD 548
S PL GFSWRGGSERDT GIL+WSE F +GE++ ++L+DTQGAFDS+STV+D
Sbjct: 111 WMSPNSPLSGFSWRGGSERDTNGILIWSEPFIMKDKNGEEIAVLLMDTQGAFDSQSTVKD 170
Query: 549 CATVFALSTMLSSVQIYNLSQNIQEDDLXHL 641
CAT+FALSTM+SSVQIYNLSQNIQEDDL HL
Sbjct: 171 CATIFALSTMISSVQIYNLSQNIQEDDLQHL 201
>AC024817-7|AAK68527.1| 573|Caenorhabditis elegans Hypothetical
protein Y54G2A.2a protein.
Length = 573
Score = 183 bits (445), Expect = 1e-46
Identities = 91/151 (60%), Positives = 110/151 (72%), Gaps = 6/151 (3%)
Frame = +3
Query: 207 EALKSLLLKEDVRDRAVVVISVAGAFRKGKSFLLDFFLRYMHYK------YXXXXXXXXX 368
E L+ +LL V D+ V VI VAGA+RKGKSFLL+FFLRY+ ++
Sbjct: 51 ELLEKILLDPKVADKKVAVIGVAGAYRKGKSFLLNFFLRYLTWRSKADKVMGEVELDNSQ 110
Query: 369 XXSEQDPLQGFSWRGGSERDTTGILMWSEIFKATLDDGEKVPIILLDTQGAFDSESTVRD 548
S PL GFSWRGGSERDT GIL+WSE F +GE++ ++L+DTQGAFDS+STV+D
Sbjct: 111 WMSPNSPLSGFSWRGGSERDTNGILIWSEPFIMKDKNGEEIAVLLMDTQGAFDSQSTVKD 170
Query: 549 CATVFALSTMLSSVQIYNLSQNIQEDDLXHL 641
CAT+FALSTM+SSVQIYNLSQNIQEDDL HL
Sbjct: 171 CATIFALSTMISSVQIYNLSQNIQEDDLQHL 201
>Z95559-2|CAB09000.3| 520|Caenorhabditis elegans Hypothetical
protein Y41E3.3 protein.
Length = 520
Score = 143 bits (346), Expect = 1e-34
Identities = 73/147 (49%), Positives = 92/147 (62%), Gaps = 1/147 (0%)
Frame = +3
Query: 204 EEALKSLLLKEDVRDRAVVVISVAGAFRKGKSFLLDFFLRYMHYKYXXXXXXXXXXXSEQ 383
E AL S+L ++ +V+ISVAGAFRKGKSFLL+FFL Y++ +
Sbjct: 47 ESALNSVLGHSACANKKIVIISVAGAFRKGKSFLLNFFLEYLYSLHKSQQSDSSLEWLTD 106
Query: 384 D-PLQGFSWRGGSERDTTGILMWSEIFKATLDDGEKVPIILLDTQGAFDSESTVRDCATV 560
D L GF WR G +RDT GI +W E GE ++L+DTQG FD+ ST + C TV
Sbjct: 107 DCQLHGFHWRAGVKRDTVGIWLWGEPIMIESVTGEMFAVVLMDTQGTFDNNSTYQQCMTV 166
Query: 561 FALSTMLSSVQIYNLSQNIQEDDLXHL 641
FALST++SSVQIYN+ NIQED L HL
Sbjct: 167 FALSTIVSSVQIYNVVDNIQEDALQHL 193
>U56963-11|AAB38127.1| 342|Caenorhabditis elegans Serpentine
receptor, class v protein32 protein.
Length = 342
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +3
Query: 192 SPXYEEALKSLLLKEDVRDRAVVVISVAGAFRKGKSFLLDFFLRYMHY 335
S Y S+LL+ + D +++ + SFL +F+ Y HY
Sbjct: 40 SNTYNTTFYSILLQHCIADLLAMLVFFVAVDARSYSFLKEFYFEYQHY 87
>AL021386-3|CAA16167.1| 330|Caenorhabditis elegans Hypothetical
protein F57E7.3 protein.
Length = 330
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 106 MVIAFPMFMSFVFSHIQFIYYRTLTSL 26
+V+ F +M F S I F +Y+TLT L
Sbjct: 196 LVVPFMFYMVFTASQIIFFFYKTLTFL 222
>U88173-6|AAM15575.1| 1282|Caenorhabditis elegans Hypothetical
protein F46F11.9b protein.
Length = 1282
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/67 (23%), Positives = 32/67 (47%)
Frame = -3
Query: 583 DSIVDRANTVAQSRTVDSLSKAPCVSNNIIGTFSPSSSVALNISDHMSMPVVSLSEPPRQ 404
+ ++++ A + D+++ P ++N SP+SSVA S ++ VS + P
Sbjct: 230 NDVLEKGLEEAHQHSTDAIAPGPNGASNQQSPSSPTSSVATISSTMPAVGSVSPNSHPNS 289
Query: 403 LKPWRGS 383
W+ S
Sbjct: 290 TVVWKSS 296
>U88173-5|AAM15574.1| 1280|Caenorhabditis elegans Hypothetical
protein F46F11.9a protein.
Length = 1280
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/67 (23%), Positives = 32/67 (47%)
Frame = -3
Query: 583 DSIVDRANTVAQSRTVDSLSKAPCVSNNIIGTFSPSSSVALNISDHMSMPVVSLSEPPRQ 404
+ ++++ A + D+++ P ++N SP+SSVA S ++ VS + P
Sbjct: 230 NDVLEKGLEEAHQHSTDAIAPGPNGASNQQSPSSPTSSVATISSTMPAVGSVSPNSHPNS 289
Query: 403 LKPWRGS 383
W+ S
Sbjct: 290 TVVWKSS 296
>U46669-2|AAZ86797.1| 429|Caenorhabditis elegans Hypothetical
protein C41G11.1a protein.
Length = 429
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +3
Query: 483 EKVPIILLDTQGAFDSESTVRDCATVFALSTMLSSVQIYNLSQNIQED 626
+ PI LL G D ++ V DC F TMLS Y + +I D
Sbjct: 159 DNFPIPLLLGLGNHDYDNNVNDCVLNFCAHTMLSWYTDYVKNHSIVAD 206
>U46669-1|AAZ86798.1| 413|Caenorhabditis elegans Hypothetical
protein C41G11.1b protein.
Length = 413
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +3
Query: 483 EKVPIILLDTQGAFDSESTVRDCATVFALSTMLSSVQIYNLSQNIQED 626
+ PI LL G D ++ V DC F TMLS Y + +I D
Sbjct: 143 DNFPIPLLLGLGNHDYDNNVNDCVLNFCAHTMLSWYTDYVKNHSIVAD 190
>AF332207-1|AAK17978.1| 378|Caenorhabditis elegans nuclear receptor
NHR-57 protein.
Length = 378
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -1
Query: 603 GCISERTTASWTERTRSHSLAPWIHCRRRLACLTILS 493
G I+ + A++ RT S +LAP CR++ C+ +S
Sbjct: 27 GAIACKACAAFFRRTTSMNLAPKFVCRKKNECVIKMS 63
>AF016445-12|AAC69062.1| 374|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 57 protein.
Length = 374
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -1
Query: 603 GCISERTTASWTERTRSHSLAPWIHCRRRLACLTILS 493
G I+ + A++ RT S +LAP CR++ C+ +S
Sbjct: 23 GAIACKACAAFFRRTTSMNLAPKFVCRKKNECVIKMS 59
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,446,102
Number of Sequences: 27780
Number of extensions: 268728
Number of successful extensions: 980
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -