Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_J17
         (642 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   4.4  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    22   5.8  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    22   5.8  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    22   5.8  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    22   5.8  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   7.7  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -3

Query: 529 LSKAPCVSNNIIGTFSPSSSVALNISDHMSMPVVSLSE 416
           LSK   VS   +GT S +SS A + +   S    S+SE
Sbjct: 167 LSKRRSVSECSLGTASSTSSTASSRNSDRSAGSPSVSE 204


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +1

Query: 277 EPSGKESPSYWTSS 318
           E SGKES  Y TSS
Sbjct: 190 EKSGKESKKYATSS 203


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +1

Query: 277 EPSGKESPSYWTSS 318
           E SGKES  Y TSS
Sbjct: 201 EKSGKESKKYATSS 214


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +1

Query: 277 EPSGKESPSYWTSS 318
           E SGKES  Y TSS
Sbjct: 201 EKSGKESKKYATSS 214


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +1

Query: 277 EPSGKESPSYWTSS 318
           E SGKES  Y TSS
Sbjct: 190 EKSGKESKKYATSS 203


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -3

Query: 439 MPVVSLSEPPRQLKPW 392
           +P+   + PPR ++PW
Sbjct: 367 VPIYCGNFPPRSMEPW 382


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,601
Number of Sequences: 438
Number of extensions: 3994
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)