Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_J15
(847 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0238 - 27099454-27099651,27100970-27101053 31 1.5
11_04_0247 + 15313008-15313137,15313226-15313959,15314038-153141... 29 4.7
05_07_0218 + 28470325-28470454,28470543-28471276,28471355-284718... 29 4.7
04_01_0582 - 7558115-7558415,7558495-7558665,7558748-7559189,755... 29 4.7
05_03_0464 + 14350391-14350520,14350609-14351342,14351421-143518... 29 6.2
12_02_0938 - 24576419-24576719,24576817-24576969,24577052-245778... 28 8.1
04_03_0421 - 15725045-15725193,15725528-15725599,15725709-157257... 28 8.1
04_03_0412 - 15595781-15596081,15596161-15596331,15596414-155972... 28 8.1
>02_05_0238 - 27099454-27099651,27100970-27101053
Length = 93
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +3
Query: 426 YQLMMYISKPRYLNNTQLLDPGLDLNMEGGMGE 524
Y+ + +S+P Y N +L++ G DLN GGM E
Sbjct: 62 YKQLANMSEPEYSENGELINAGYDLN-AGGMSE 93
>11_04_0247 +
15313008-15313137,15313226-15313959,15314038-15314169,
15314179-15314499,15314581-15314888,15315007-15315411,
15315494-15315664,15315744-15316002,15316443-15316481,
15317619-15317750
Length = 876
Score = 29.1 bits (62), Expect = 4.7
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = +3
Query: 417 IACYQLMMYISKPRYLNNTQLLDPGLDLNMEGGMGEHIKDIVILSSITQVLALINNYFW 593
+ CY L+ +I RY N LDP + + ++ + S T+V+ +N W
Sbjct: 672 LKCYSLLCWIESRRYGNQVGFLDPSM-----------VNEVNLRQSFTEVVDYVNRCLW 719
>05_07_0218 +
28470325-28470454,28470543-28471276,28471355-28471816,
28471898-28472730,28472813-28472983,28473063-28473180
Length = 815
Score = 29.1 bits (62), Expect = 4.7
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = +3
Query: 417 IACYQLMMYISKPRYLNNTQLLDPGLDLNMEGGMGEHIKDIVILSSITQVLALINNYFW 593
+ CY L+ +I RY N LDP + + ++ + S T+V+ +N W
Sbjct: 715 LKCYSLLCWIESRRYGNQVGFLDPSM-----------VNEVNLRQSFTEVVDYVNRCLW 762
>04_01_0582 -
7558115-7558415,7558495-7558665,7558748-7559189,
7559301-7559580,7559662-7560123,7560202-7560935,
7561024-7561153
Length = 839
Score = 29.1 bits (62), Expect = 4.7
Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Frame = +3
Query: 417 IACYQLMMYISKPRYLNNTQLLDPGL--DLNMEGGMGE---HIKDIVILSSITQVLALIN 581
+ CY L+ +I R+ N LDP + ++N++ E ++ + + + ++
Sbjct: 678 LKCYSLLCWIESRRHGNQVGFLDPSMVNEVNLQQSFTEVVDYVNRCLWAHQDKEYIMCVH 737
Query: 582 NY--FWLLLLILP 614
N W+LL+I+P
Sbjct: 738 NQERHWILLVIVP 750
>05_03_0464 +
14350391-14350520,14350609-14351342,14351421-14351882,
14351964-14352796,14352879-14352948,14352964-14353049,
14353129-14353429
Length = 871
Score = 28.7 bits (61), Expect = 6.2
Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +3
Query: 417 IACYQLMMYISKPRYLNNTQLLDPGLDLNMEGGMGEHIKDIVILSSITQVLALINNY--F 590
+ CY L+ +I R+ N LDP + + +++ + + + +N
Sbjct: 715 LKCYSLLCWIESRRHGNQVGFLDPSMVNESSTEVVDYVNRCLWAHQDKEYIMCAHNQERH 774
Query: 591 WLLLLILP 614
W+LL+I+P
Sbjct: 775 WILLVIVP 782
>12_02_0938 -
24576419-24576719,24576817-24576969,24577052-24577884,
24577966-24578427,24578506-24579213
Length = 818
Score = 28.3 bits (60), Expect = 8.1
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +3
Query: 417 IACYQLMMYISKPRYLNNTQLLDPGL--DLNMEGGMGEHIKDIVILSSITQVLALINNYF 590
+ CY L+ +I R+ N LDP + ++N+ E + + Q I +
Sbjct: 663 LKCYSLLCWIESRRHGNQVGFLDPSMVNEVNLRQSFTEVVDYVNRCLWAHQDKEYIMRH- 721
Query: 591 WLLLLILP 614
W+LL+I+P
Sbjct: 722 WILLVIVP 729
>04_03_0421 -
15725045-15725193,15725528-15725599,15725709-15725784,
15728607-15728679,15728919-15728983,15729423-15729681,
15729761-15729931,15730014-15730846,15731097-15731390,
15731469-15731939
Length = 820
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/59 (23%), Positives = 27/59 (45%)
Frame = +3
Query: 417 IACYQLMMYISKPRYLNNTQLLDPGLDLNMEGGMGEHIKDIVILSSITQVLALINNYFW 593
+ CY L+ +I R+ N + LDP + + ++ + S T+V+ +N W
Sbjct: 528 LKCYSLLCWIESRRHGNQVRFLDPSM-----------VNEVNLRQSFTEVVDYVNRCLW 575
>04_03_0412 -
15595781-15596081,15596161-15596331,15596414-15597246,
15597369-15597788,15597867-15598337
Length = 731
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/59 (23%), Positives = 27/59 (45%)
Frame = +3
Query: 417 IACYQLMMYISKPRYLNNTQLLDPGLDLNMEGGMGEHIKDIVILSSITQVLALINNYFW 593
+ CY L+ +I R+ N + LDP + + ++ + S T+V+ +N W
Sbjct: 570 LKCYSLLCWIESRRHGNQVRFLDPSM-----------VNEVNLRQSFTEVVDYVNRCLW 617
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,088,521
Number of Sequences: 37544
Number of extensions: 378610
Number of successful extensions: 750
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -