Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_J14
(502 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0343 - 20437780-20438009,20438576-20438666 31 0.69
01_03_0175 + 13450869-13451013,13451293-13451372,13451417-134522... 30 0.91
01_05_0769 - 25042022-25042447,25042856-25043234,25043714-250437... 29 1.6
04_04_0111 - 22842337-22842648,22843008-22843402,22843732-228440... 29 2.1
08_02_0604 - 19215017-19215101,19215870-19216021,19216591-192166... 29 2.8
01_06_0231 + 27727110-27727206,27727315-27727447,27727491-277275... 29 2.8
01_03_0108 - 12628711-12629178 29 2.8
07_01_0266 + 1977961-1978120,1979547-1979680,1979813-1979911,198... 28 3.7
02_05_0979 + 33268294-33269595 28 3.7
08_02_0484 + 17665714-17666877 28 4.8
12_02_1179 - 26720533-26721021,26721329-26722597 27 6.4
04_04_0475 + 25500470-25500609,25500697-25500794,25502806-255029... 27 6.4
12_02_0037 - 12613686-12614318,12614792-12614878,12614985-126151... 27 8.5
03_05_0348 - 23346182-23348022,23348118-23348148 27 8.5
01_05_0652 - 23934604-23934636,23934783-23934893,23935000-239351... 27 8.5
>05_04_0343 - 20437780-20438009,20438576-20438666
Length = 106
Score = 30.7 bits (66), Expect = 0.69
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 165 KNSNSQGSNTSAANAIALGAMAVVAVGTFLFTWWKERKVPPPH 293
K + S+G + LG AVV + FLF +W+++K H
Sbjct: 43 KKAQSKGHTGRTVLIVLLGIGAVVLLSFFLFKYWQKKKREEQH 85
>01_03_0175 +
13450869-13451013,13451293-13451372,13451417-13452240,
13452287-13452638
Length = 466
Score = 30.3 bits (65), Expect = 0.91
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +1
Query: 232 LWRSEHFSLLGGKKGRFPHRTELKARIGEDSSRT 333
LW EHF L G + PHR + IG DS+ T
Sbjct: 67 LWSIEHFGLRTGLRRPLPHRHLRVSDIGIDSTST 100
>01_05_0769 -
25042022-25042447,25042856-25043234,25043714-25043763,
25044222-25044442,25045085-25045385
Length = 458
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 195 SAANAIALGAMAVVAVGTFLFTWWKERKVPPPHGAQG 305
+AA A A+ A+ +AV T + WW R++ AQG
Sbjct: 14 AAAAAAAVAALLWLAVSTLEWAWWTPRRLERALRAQG 50
>04_04_0111 -
22842337-22842648,22843008-22843402,22843732-22844073,
22844154-22844282,22844402-22844514,22844596-22844667,
22844783-22844859,22844978-22845052,22845058-22845121,
22845332-22845403,22845496-22845628,22846859-22846961
Length = 628
Score = 29.1 bits (62), Expect = 2.1
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +3
Query: 177 SQG-SNTSA-ANAIALGAMAVVAVGTFLFTWWKERKVPPPH 293
SQG S T A A +A A + AV F WW+ RK P H
Sbjct: 235 SQGDSKTGAIAGGVAAAAALLFAVPAIGFAWWRRRK-PEEH 274
>08_02_0604 -
19215017-19215101,19215870-19216021,19216591-19216614,
19216656-19216884,19217061-19217177,19219249-19219311,
19219887-19220125
Length = 302
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Frame = +3
Query: 204 NAIALGAM---AVVAVGTFLFTWWKERKVP 284
N I +G++ A+V VG +LF W K R++P
Sbjct: 269 NDITIGSLLGTALVIVGLYLFLWAKAREIP 298
>01_06_0231 +
27727110-27727206,27727315-27727447,27727491-27727553,
27729069-27729140,27729640-27729783,27729868-27729990,
27730102-27730157,27730249-27730635,27731176-27731366,
27731498-27731630,27731715-27731869,27732188-27732379,
27732490-27732750
Length = 668
Score = 28.7 bits (61), Expect = 2.8
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 195 SAANAIALGAMAVVAVGTFLFTWWKERKVPPP 290
++ANA +V + GT F+ +KE KVPPP
Sbjct: 259 ASANAPVPAVASVPSTGTGSFSAFKEIKVPPP 290
>01_03_0108 - 12628711-12629178
Length = 155
Score = 28.7 bits (61), Expect = 2.8
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -1
Query: 394 KHKRVHVSIILRTKLFFRCTMFCYYLRRFAP*APCGGGTFLSFH 263
KHK+V ++++ K+ T LR+ P A CG GTF++ H
Sbjct: 94 KHKKVKLAVLQFYKVD-DATGKVTRLRKECPNAECGAGTFMANH 136
>07_01_0266 +
1977961-1978120,1979547-1979680,1979813-1979911,
1980257-1980414,1981930-1982018,1982678-1982769,
1983658-1983706,1983953-1983966
Length = 264
Score = 28.3 bits (60), Expect = 3.7
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 126 NDNDCDGTLCTVQIENETKLACRFT 52
+DN C G L T N +K+ C FT
Sbjct: 239 DDNTCQGELVTEYTNNGSKITCGFT 263
>02_05_0979 + 33268294-33269595
Length = 433
Score = 28.3 bits (60), Expect = 3.7
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = -3
Query: 290 RWGNLPFFPPSKEKCSDRHNRHRA*CYSISSGCVAALRIRILGHRKMAIYLWQRKTTMIV 111
+W +L PP +E + RH H S C + ++I GH YLW T I+
Sbjct: 94 QWQHLIPRPPVEEIMTARHLPHGTIFPLASKSCHGLVLLKITGHH--THYLWNPSTRHIL 151
>08_02_0484 + 17665714-17666877
Length = 387
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 210 IALGAMAVVAVGTFLFTWWKERKVPPPHGAQG 305
+A+ A AVVA+ LF W+ ++V G G
Sbjct: 14 VAVAAAAVVALAVALFLLWRNKRVARAGGGAG 45
>12_02_1179 - 26720533-26721021,26721329-26722597
Length = 585
Score = 27.5 bits (58), Expect = 6.4
Identities = 13/50 (26%), Positives = 21/50 (42%)
Frame = +3
Query: 135 PQINCHFAMTKNSNSQGSNTSAANAIALGAMAVVAVGTFLFTWWKERKVP 284
P C K + + N + ++ + VVA+ F WWK+ K P
Sbjct: 531 PCQECQAVNEKKTGGKKRNANRSHYPVFLFVFVVAIIALFFPWWKDYKEP 580
>04_04_0475 +
25500470-25500609,25500697-25500794,25502806-25502915,
25502998-25503293,25503399-25503474,25503577-25503688,
25503955-25504004,25504090-25504392,25504446-25504547,
25505463-25505635,25505745-25505917,25505997-25506106,
25506180-25506329,25506726-25506881,25507000-25507116,
25507277-25507474,25507809-25507952
Length = 835
Score = 27.5 bits (58), Expect = 6.4
Identities = 10/38 (26%), Positives = 19/38 (50%)
Frame = +3
Query: 153 FAMTKNSNSQGSNTSAANAIALGAMAVVAVGTFLFTWW 266
+ + +N + + A ++ +A+ A G FLF WW
Sbjct: 55 YLLKRNLQATAKSFMAEGKVSADPVAIDAPGGFLFEWW 92
>12_02_0037 -
12613686-12614318,12614792-12614878,12614985-12615176,
12617246-12617371,12617479-12617565,12617994-12618458,
12618868-12618947,12619739-12619751
Length = 560
Score = 27.1 bits (57), Expect = 8.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 351 YFSAALCSATIFADSRLELRAVGEPSFL 268
YF A LC T+ +S + + AV P FL
Sbjct: 404 YFVATLCMCTLLVESMMMIIAVIVPDFL 431
>03_05_0348 - 23346182-23348022,23348118-23348148
Length = 623
Score = 27.1 bits (57), Expect = 8.5
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 126 FSLPQINCHFAMTKNSNSQGSNTSAANAIALGAMAVVA 239
FSL Q + A+ + ++ T+ +AIALG VVA
Sbjct: 161 FSLAQPRAYVALNDPAAAEADITALVDAIALGLFCVVA 198
>01_05_0652 -
23934604-23934636,23934783-23934893,23935000-23935188,
23935893-23936012,23936109-23936273,23936638-23936790,
23936867-23936976,23937280-23937397,23938197-23938427,
23938984-23939175,23939661-23939945,23940637-23940686,
23940846-23940921,23941048-23941135,23941689-23941771,
23941883-23942248,23942462-23942476,23942909-23943018,
23943134-23943231,23943961-23944019
Length = 883
Score = 27.1 bits (57), Expect = 8.5
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +3
Query: 153 FAMTKNSNSQGSNTSAANAIALGAMAVVAVGTFLFTWW 266
+ M +N + A ++ +A+ A G FLF WW
Sbjct: 28 YFMKRNLQATAKAFQAEGKVSSDPVAIDAPGGFLFEWW 65
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,156,416
Number of Sequences: 37544
Number of extensions: 242799
Number of successful extensions: 635
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -