Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_J14
         (502 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g59730.1 68416.m06664 receptor lectin kinase, putative simila...    29   1.8  
At1g71830.1 68414.m08301 leucine-rich repeat family protein / pr...    29   2.3  
At3g62250.1 68416.m06993 ubiquitin extension protein 5 (UBQ5) / ...    28   4.1  
At1g34210.1 68414.m04245 somatic embryogenesis receptor-like kin...    28   4.1  
At2g47110.1 68415.m05883 ubiquitin extension protein 6 (UBQ6) / ...    27   5.4  
At2g16960.1 68415.m01954 importin beta-2 subunit family protein ...    27   9.4  

>At3g59730.1 68416.m06664 receptor lectin kinase, putative similar
           to receptor lectin kinase 3 [Arabidopsis thaliana]
           gi|4100060|gb|AAD00733; contains pfam domains PF00139:
           Legume lectins beta domain and PF00069: Protein kinase
           domain
          Length = 523

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -3

Query: 341 LHY-VLLLSSPIRALSSVRWGNLPFFPPSKEKCSDRHNRHRA*CYSIS 201
           LHY VL+ + P      + +G +P  PP  +K SDR     A C +++
Sbjct: 239 LHYMVLVYTYPEAVYQPLEFGRVPTLPPYPKKPSDRLRTVLAVCLTLA 286


>At1g71830.1 68414.m08301 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 625

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 183 GSNTSAANAIALGAMAVVAVGTFLFTWWKERK 278
           G   + A  +A GA  + A     F WW+ RK
Sbjct: 235 GITGAIAGGVAAGAALLFAAPAIAFAWWRRRK 266


>At3g62250.1 68416.m06993 ubiquitin extension protein 5 (UBQ5) / 40S
           ribosomal protein S27A (RPS27aC) identical to GI:166933,
           GI:166934
          Length = 157

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -1

Query: 394 KHKRVHVSIILRTKLFFRCTMFCYYLRRFAP*APCGGGTFLSFH 263
           KHK+V ++++   K+     +    LR+  P A CG GTF++ H
Sbjct: 94  KHKKVKLAVLQFYKIDGSGKV--QRLRKECPNATCGAGTFMASH 135


>At1g34210.1 68414.m04245 somatic embryogenesis receptor-like kinase
           2 (SERK2) nearly identical to somatic embryogenesis
           receptor-like kinase 2 [Arabidopsis thaliana]
           GI:14573457; contains Pfam domains PF00560: Leucine Rich
           Repeat and PF00069: Protein kinase domain; identical to
           cDNA somatic embryogenesis receptor-like kinase 2
           (SERK2) GI:14573456
          Length = 628

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 201 ANAIALGAMAVVAVGTFLFTWWKERK 278
           A  +A GA  + A     F WW+ RK
Sbjct: 244 AGGVAAGAALLFAAPALAFAWWRRRK 269


>At2g47110.1 68415.m05883 ubiquitin extension protein 6 (UBQ6) / 40S
           ribosomal protein S27A (RPS27aB) identical to GI:166936
          Length = 157

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -1

Query: 394 KHKRVHVSIILRTKLFFRCTMFCYYLRRFAP*APCGGGTFLSFH 263
           KHK+V ++++   K+     +    LR+  P A CG GTF++ H
Sbjct: 94  KHKKVKLAVLQFYKVDGSGKV--QRLRKECPNATCGAGTFMASH 135


>At2g16960.1 68415.m01954 importin beta-2 subunit family protein
           contains weak hit to Pfam PF02985: HEAT repeat (4
           copies); contains weak hit to Pfam PF03130: PBS lyase
           HEAT-like repeat (2 copies); supported by tandem
           duplication of importin beta family protein
           (TIGR_Ath1:At2g16950) [Arabidopsis thaliana]; similar to
           Importin beta-2 subunit (Karyopherin beta-2 subunit)
           (Transportin) (M9 region interaction protein) (MIP)
           (Swiss-Prot:Q92973) [Homo sapiens]
          Length = 547

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +3

Query: 147 CHFAMTKNSNSQGSNTSAAN--AIALGAMAV 233
           CH  +TK++N  G N SAAN    A+G +AV
Sbjct: 336 CH--LTKSANFSGENLSAANNACKAIGELAV 364


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,486,297
Number of Sequences: 28952
Number of extensions: 183703
Number of successful extensions: 477
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)