Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_J12
(803 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g17190.1 68417.m02586 farnesyl pyrophosphate synthetase 2 (FP... 142 3e-34
At5g47770.1 68418.m05901 farnesyl pyrophosphate synthetase 1, mi... 140 7e-34
At4g17190.2 68417.m02585 farnesyl pyrophosphate synthetase 2 (FP... 71 9e-13
At1g78510.1 68414.m09151 solanesyl diphosphate synthase (SPS) id... 33 0.17
At1g17050.1 68414.m02073 geranyl diphosphate synthase, putative ... 33 0.29
At5g22290.1 68418.m02599 no apical meristem (NAM) family protein... 28 8.3
At2g44880.1 68415.m05587 pentatricopeptide (PPR) repeat-containi... 28 8.3
At1g32230.2 68414.m03965 WWE domain-containing protein / ceo pro... 28 8.3
At1g32230.1 68414.m03964 WWE domain-containing protein / ceo pro... 28 8.3
>At4g17190.1 68417.m02586 farnesyl pyrophosphate synthetase 2 (FPS2)
/ FPP synthetase 2 / farnesyl diphosphate synthase 2
identical to SP|Q43315 Farnesyl pyrophosphate synthetase
2 (FPP synthetase 2) (FPS 2) (Farnesyl diphosphate
synthetase 2) [Includes: Dimethylallyltransferase (EC
2.5.1.1); Geranyltranstransferase (EC 2.5.1.10)]
{Arabidopsis thaliana}
Length = 342
Score = 142 bits (343), Expect = 3e-34
Identities = 61/129 (47%), Positives = 90/129 (69%)
Frame = +3
Query: 411 WLKKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLGWCVEMFQAYCIVLD 590
WL++ML YN+ GGK RG++ V SYK +++ + +TE ++C LGWC+E QAY +VLD
Sbjct: 34 WLERMLDYNVRGGKLNRGLSVVDSYKLLKQGQDLTEKETFLSCALGWCIEWLQAYFLVLD 93
Query: 591 DIMDGSSVRRGMPCWYRRPEVGITCAFNDSLLIHSSLFEFLKTNFRTNPNYMKMFELFNE 770
DIMD S RRG PCW+R+P+VG+ A ND +L+ + + LK +FR P Y+ + +LFNE
Sbjct: 94 DIMDNSVTRRGQPCWFRKPKVGM-IAINDGILLRNHIHRILKKHFREMPYYVDLVDLFNE 152
Query: 771 TLWRTSMGQ 797
++T+ GQ
Sbjct: 153 VEFQTACGQ 161
>At5g47770.1 68418.m05901 farnesyl pyrophosphate synthetase 1,
mitochondrial (FPS1) / FPP synthetase 1 / farnesyl
diphosphate synthase 1 identical to SP|Q09152 Farnesyl
pyrophosphate synthetase 1, mitochondrial precursor (FPP
synthetase 1) (FPS 1) (Farnesyl diphosphate synthetase
1) [Includes: Dimethylallyltransferase (EC 2.5.1.1);
Geranyltranstransferase (EC 2.5.1.10)] {Arabidopsis
thaliana}
Length = 384
Score = 140 bits (340), Expect = 7e-34
Identities = 71/181 (39%), Positives = 108/181 (59%)
Frame = +3
Query: 255 LIRYKNNSANMTTASKNLEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQIGDWLKKMLHY 434
L R + S++M T K+ + + DLL + N+S+L W+ +ML Y
Sbjct: 32 LYRRRIQSSSMETDLKSTFLNVYSVLKSDLLHDPSFEFTNESRL--------WVDRMLDY 83
Query: 435 NLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLGWCVEMFQAYCIVLDDIMDGSSV 614
N+ GGK RG++ V S+K +++ +TE + ++C LGWC+E QAY +VLDDIMD S
Sbjct: 84 NVRGGKLNRGLSVVDSFKLLKQGNDLTEQEVFLSCALGWCIEWLQAYFLVLDDIMDNSVT 143
Query: 615 RRGMPCWYRRPEVGITCAFNDSLLIHSSLFEFLKTNFRTNPNYMKMFELFNETLWRTSMG 794
RRG PCW+R P+VG+ A ND +L+ + + LK +FR P Y+ + +LFNE +T+ G
Sbjct: 144 RRGQPCWFRVPQVGMV-AINDGILLRNHIHRILKKHFRDKPYYVDLVDLFNEVELQTACG 202
Query: 795 Q 797
Q
Sbjct: 203 Q 203
>At4g17190.2 68417.m02585 farnesyl pyrophosphate synthetase 2 (FPS2)
/ FPP synthetase 2 / farnesyl diphosphate synthase 2
identical to SP|Q43315 Farnesyl pyrophosphate synthetase
2 (FPP synthetase 2) (FPS 2) (Farnesyl diphosphate
synthetase 2) [Includes: Dimethylallyltransferase (EC
2.5.1.1); Geranyltranstransferase (EC 2.5.1.10)]
{Arabidopsis thaliana}
Length = 247
Score = 70.9 bits (166), Expect = 9e-13
Identities = 30/67 (44%), Positives = 45/67 (67%)
Frame = +3
Query: 597 MDGSSVRRGMPCWYRRPEVGITCAFNDSLLIHSSLFEFLKTNFRTNPNYMKMFELFNETL 776
MD S RRG PCW+R+P+VG+ A ND +L+ + + LK +FR P Y+ + +LFNE
Sbjct: 1 MDNSVTRRGQPCWFRKPKVGMI-AINDGILLRNHIHRILKKHFREMPYYVDLVDLFNEVE 59
Query: 777 WRTSMGQ 797
++T+ GQ
Sbjct: 60 FQTACGQ 66
>At1g78510.1 68414.m09151 solanesyl diphosphate synthase (SPS)
identical to solanesyl diphosphate synthase [Arabidopsis
thaliana] GI:19911233; contains Pfam profile PF00348:
Polyprenyl synthetase
Length = 406
Score = 33.5 bits (73), Expect = 0.17
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = +3
Query: 444 GGKHTR-GITTVISYKTIEKP---EKVTEHTLKMACKLGWCVEMFQAYCIVLDDIMDGSS 611
GGK R G+ ++S+ T E E TEH +L +EM ++ DD++D S
Sbjct: 124 GGKRMRPGLVFLVSHATAELAGLKELTTEHR-----RLAEIIEMIHTASLIHDDVLDESD 178
Query: 612 VRRG 623
+RRG
Sbjct: 179 MRRG 182
>At1g17050.1 68414.m02073 geranyl diphosphate synthase, putative /
GPPS, putative / dimethylallyltransferase, putative /
prenyl transferase, putative similar to GI:11322965;
Except for first 55 amino acids, 52% identical to Prenyl
transferase (Cyanophora paradoxa) (gi 99282). Location
of est 120E9T7 (gb|T43950)
Length = 417
Score = 32.7 bits (71), Expect = 0.29
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +3
Query: 444 GGKHTR-GITTVISYKTIEKPEKVTEHTLKMACKLGWCVEMFQAYCIVLDDIMDGSSVRR 620
GGK R G+ ++S T E + E T++ +LG +EM ++ DD++D S +RR
Sbjct: 135 GGKRMRPGLVFLVSRATAELAG-LKELTVEHR-RLGEIIEMIHTASLIHDDVLDESDMRR 192
Query: 621 G 623
G
Sbjct: 193 G 193
>At5g22290.1 68418.m02599 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain
Length = 340
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 279 ANMTTASKNLEIINEKKMFDDLLPEVIMTLQNKSKLSEVP 398
A M +S+NL++ N++ F D+L + I+ L P
Sbjct: 219 AEMAESSENLQVDNDEDFFADILRDEIINLDEAVMTGNTP 258
>At2g44880.1 68415.m05587 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 555
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = +3
Query: 375 KSKLSEVP--QIGDWLKKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLG 548
K E+P Q+ W M+H + G + ++ EKP+++T + AC G
Sbjct: 329 KRIFDEMPEKQVASW-NAMIHGYALNGNARAALDLFVTMMIEEKPDEITMLAVITACNHG 387
Query: 549 WCVE 560
VE
Sbjct: 388 GLVE 391
>At1g32230.2 68414.m03965 WWE domain-containing protein / ceo
protein, putative (CEO) contains Pfam domain, PF02825:
WWE domain; identical to cDNA for ceo protein (ceo gene)
GI:11044956
Length = 588
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 336 DDLLPEVIMTLQNKSKLSEVP 398
DDLL I TLQN+ K E+P
Sbjct: 555 DDLLRSTITTLQNQPKSKEIP 575
>At1g32230.1 68414.m03964 WWE domain-containing protein / ceo
protein, putative (CEO) contains Pfam domain, PF02825:
WWE domain; identical to cDNA for ceo protein (ceo gene)
GI:11044956
Length = 589
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 336 DDLLPEVIMTLQNKSKLSEVP 398
DDLL I TLQN+ K E+P
Sbjct: 556 DDLLRSTITTLQNQPKSKEIP 576
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,763,732
Number of Sequences: 28952
Number of extensions: 387627
Number of successful extensions: 1017
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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