Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_J11
(673 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g09210.1 68414.m01028 calreticulin 2 (CRT2) identical to SP|Q... 226 9e-60
At1g56340.1 68414.m06476 calreticulin 1 (CRT1) identical to calr... 223 1e-58
At1g08450.1 68414.m00934 calreticulin 3 (CRT3) identical to simi... 210 5e-55
At1g08450.2 68414.m00935 calreticulin 3 (CRT3) identical to simi... 109 2e-24
At5g61790.1 68418.m07754 calnexin 1 (CNX1) identical to calnexin... 101 6e-22
At5g07340.1 68418.m00838 calnexin, putative identical to calnexi... 96 2e-20
At5g56820.1 68418.m07090 F-box family protein contains F-box dom... 34 0.075
At1g74170.1 68414.m08590 leucine-rich repeat family protein cont... 31 0.70
At1g74190.1 68414.m08592 leucine-rich repeat family protein cont... 30 1.2
At2g36350.1 68415.m04461 protein kinase, putative similar to pro... 30 1.6
At2g15695.1 68415.m01797 expressed protein contains Pfam PF05705... 30 1.6
At3g31540.1 68416.m04025 hypothetical protein 29 2.1
At1g60890.1 68414.m06855 phosphatidylinositol-4-phosphate 5-kina... 29 2.8
At3g56640.1 68416.m06298 exocyst complex subunit Sec15-like fami... 29 3.7
At3g02885.1 68416.m00283 gibberellin-regulated protein 5 (GASA5)... 29 3.7
At5g06850.1 68418.m00774 C2 domain-containing protein contains I... 28 6.5
At4g16410.1 68417.m02483 expressed protein contains Pfam PF05421... 28 6.5
At5g18620.2 68418.m02206 DNA-dependent ATPase, putative similar ... 27 8.6
At5g18620.1 68418.m02205 DNA-dependent ATPase, putative similar ... 27 8.6
At4g01050.1 68417.m00142 hydroxyproline-rich glycoprotein family... 27 8.6
At3g06400.1 68416.m00738 DNA-dependent ATPase, putative similar ... 27 8.6
At2g37070.1 68415.m04549 expressed protein 27 8.6
>At1g09210.1 68414.m01028 calreticulin 2 (CRT2) identical to
SP|Q38858 Calreticulin 2 precursor {Arabidopsis
thaliana}
Length = 424
Score = 226 bits (553), Expect = 9e-60
Identities = 104/187 (55%), Positives = 134/187 (71%), Gaps = 2/187 (1%)
Frame = +3
Query: 117 VFFEEKFPDDSWESNWVYSEHPGKE--FGKFKLTAGKFFSDPEDDKGLKTSEDARFYALS 290
V FEE+F DD WE+ WV SE + G++K TAG + D +DKG++TSED RFYA+S
Sbjct: 24 VIFEERF-DDGWENRWVKSEWKKDDNTAGEWKHTAGNWSGDA-NDKGIQTSEDYRFYAIS 81
Query: 291 RKFKPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDICG 470
+F FSN+ K LV QF+VKHEQ +DCGGGY+K+ ++QK G+TPY IMFGPDICG
Sbjct: 82 AEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGDVDQKKFGGDTPYSIMFGPDICG 141
Query: 471 PGTKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLXA 650
TKKVH I +Y NHLIKKD+ C+ D TH+YT I++PD TY +LIDN + ++G L +
Sbjct: 142 YSTKKVHAILTYNEANHLIKKDVPCETDQLTHVYTFILRPDATYSILIDNVEKQTGSLYS 201
Query: 651 DWDFLPP 671
DWD LPP
Sbjct: 202 DWDLLPP 208
>At1g56340.1 68414.m06476 calreticulin 1 (CRT1) identical to
calreticulin (crt1) GI:2052379 [Arabidopsis thaliana]
Length = 425
Score = 223 bits (544), Expect = 1e-58
Identities = 100/190 (52%), Positives = 135/190 (71%), Gaps = 2/190 (1%)
Frame = +3
Query: 105 INCDVFFEEKFPDDSWESNWVYSEHPGKE--FGKFKLTAGKFFSDPEDDKGLKTSEDARF 278
++ +V FEEKF +D WE WV S+ + G++K TAG + D +DKG++TSED RF
Sbjct: 20 VSAEVIFEEKF-EDGWEKRWVKSDWKKDDNTAGEWKHTAGNWSGDA-NDKGIQTSEDYRF 77
Query: 279 YALSRKFKPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGP 458
YA+S +F FSN+ K LV QF+VKHEQ +DCGGGY+K+ ++Q G+TPY IMFGP
Sbjct: 78 YAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSDDVDQTKFGGDTPYSIMFGP 137
Query: 459 DICGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESG 638
DICG TKKVH I +Y G NHLIKK++ C+ D TH+YT +++PD TY +LIDN + ++G
Sbjct: 138 DICGYSTKKVHAILTYNGTNHLIKKEVPCETDQLTHVYTFVLRPDATYSILIDNVEKQTG 197
Query: 639 DLXADWDFLP 668
L +DWD LP
Sbjct: 198 SLYSDWDLLP 207
>At1g08450.1 68414.m00934 calreticulin 3 (CRT3) identical to similar
to SP|O04153 Calreticulin 3 precursor {Arabidopsis
thaliana}
Length = 424
Score = 210 bits (514), Expect = 5e-55
Identities = 96/188 (51%), Positives = 131/188 (69%), Gaps = 2/188 (1%)
Frame = +3
Query: 114 DVFFEEKFPDDSWESNWVYSEHPGKE--FGKFKLTAGKFFSDPEDDKGLKTSEDARFYAL 287
++F EE F + W+S WV S+ E G FK TAGK+ DP D+KG++T DA+ YA+
Sbjct: 29 EIFLEEHF-EGGWKSRWVLSDWKRNEGKAGTFKHTAGKWPGDP-DNKGIQTYNDAKHYAI 86
Query: 288 SRKFKPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDIC 467
S K FSN+ + LVVQ++VK EQDI+CGG Y+K+ + QK G+TPY +MFGPDIC
Sbjct: 87 SAKIPEFSNKNRTLVVQYSVKIEQDIECGGAYIKLLSGYVNQKQFGGDTPYSLMFGPDIC 146
Query: 468 GPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLX 647
G TKK+HVI SY+G+N+ IKKD++C+ D H YT I++PD +Y VL+DN++ E G +
Sbjct: 147 GTQTKKLHVIVSYQGQNYPIKKDLQCETDKLNHFYTFILRPDASYSVLVDNKEREFGSMY 206
Query: 648 ADWDFLPP 671
DWD LPP
Sbjct: 207 TDWDILPP 214
>At1g08450.2 68414.m00935 calreticulin 3 (CRT3) identical to similar
to SP|O04153 Calreticulin 3 precursor {Arabidopsis
thaliana}
Length = 370
Score = 109 bits (262), Expect = 2e-24
Identities = 53/114 (46%), Positives = 75/114 (65%), Gaps = 2/114 (1%)
Frame = +3
Query: 114 DVFFEEKFPDDSWESNWVYSEHPGKE--FGKFKLTAGKFFSDPEDDKGLKTSEDARFYAL 287
++F EE F + W+S WV S+ E G FK TAGK+ DP D+KG++T DA+ YA+
Sbjct: 29 EIFLEEHF-EGGWKSRWVLSDWKRNEGKAGTFKHTAGKWPGDP-DNKGIQTYNDAKHYAI 86
Query: 288 SRKFKPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIM 449
S K FSN+ + LVVQ++VK EQDI+CGG Y+K+ + QK G+TPY ++
Sbjct: 87 SAKIPEFSNKNRTLVVQYSVKIEQDIECGGAYIKLLSGYVNQKQFGGDTPYSVL 140
Score = 38.3 bits (85), Expect = 0.005
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +3
Query: 591 DNTYEVLIDNEKVESGDLXADWDFLPP 671
D Y VL+DN++ E G + DWD LPP
Sbjct: 134 DTPYSVLVDNKEREFGSMYTDWDILPP 160
>At5g61790.1 68418.m07754 calnexin 1 (CNX1) identical to calnexin
homolog 1, Arabidopsis thaliana, EMBL:AT08315
[SP|P29402]
Length = 530
Score = 101 bits (241), Expect = 6e-22
Identities = 61/186 (32%), Positives = 98/186 (52%), Gaps = 10/186 (5%)
Frame = +3
Query: 141 DDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDARFYALSRKF-KPFSNE 317
D+ ++ W+ S++ E G +K S+ +D GL SE AR Y + ++ +P + +
Sbjct: 36 DEPFDGRWIVSKNSDYE-GVWKHAK----SEGHEDYGLLVSEKARKYGIVKELDEPLNLK 90
Query: 318 GKPLVVQFTVKHEQDIDCGGGYLKVF---DCKLEQKDMHGETPYEIMFGPDICGPGTKKV 488
+V+Q+ V+ ++ ++CGG YLK + + E+PY IMFGPD CG GT KV
Sbjct: 91 EGTVVLQYEVRFQEGLECGGAYLKYLRPQEAGWTPQGFDSESPYSIMFGPDKCG-GTNKV 149
Query: 489 HVIFSYKGKN------HLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLXA 650
H I +K H +K D +H+YT I+KPDN +L+D E+ + +L +
Sbjct: 150 HFILKHKNPKSGEYVEHHLKFPPSVPYDKLSHVYTAILKPDNEVRILVDGEEKKKANLLS 209
Query: 651 DWDFLP 668
DF P
Sbjct: 210 GEDFEP 215
>At5g07340.1 68418.m00838 calnexin, putative identical to calnexin
homolog 2 from Arabidopsis thaliana [SP|Q38798], strong
similarity to calnexin homolog 1, Arabidopsis thaliana,
EMBL:AT08315 [SP|P29402]; contains Pfam profile PF00262
calreticulin family
Length = 532
Score = 96.3 bits (229), Expect = 2e-20
Identities = 62/190 (32%), Positives = 99/190 (52%), Gaps = 13/190 (6%)
Frame = +3
Query: 141 DDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDARFYALSRKF---KPFS 311
D+ ++ WV SE + G +K S+ DD GL SE A+ Y + ++ +P +
Sbjct: 36 DEPFDGRWVVSEKAEYQ-GVWKHEK----SEGHDDYGLLVSEKAKKYGIVKELDVDEPLN 90
Query: 312 -NEGKPLVVQFTVKHEQDIDCGGGYLKVF---DCKLEQKDMHGETPYEIMFGPDICGPGT 479
NEG +V+Q+ + ++ ++CGG YLK + + ++PY IMFGPD CG T
Sbjct: 91 LNEGT-VVLQYEARFQEGLECGGAYLKYLRPQEAGWVPQGFDNDSPYSIMFGPDKCG-AT 148
Query: 480 KKVHVIFSYKGKN------HLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGD 641
KVH I +K H +K D+ +H+YT ++K DN +L+D E+ + G+
Sbjct: 149 NKVHFILKHKNPKSGEFVEHHLKFPPSVPFDMLSHVYTAVLKSDNEVRILVDGEEKKKGN 208
Query: 642 LXADWDFLPP 671
L + DF PP
Sbjct: 209 LLSAEDFEPP 218
>At5g56820.1 68418.m07090 F-box family protein contains F-box domain
Pfam:PF00646
Length = 435
Score = 34.3 bits (75), Expect = 0.075
Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 6/102 (5%)
Frame = -1
Query: 310 LNG---LNLRERA*NLASSEVF-KPLSSSGSLKNFPAVNLNFPNSFPGC-SLYTQLLSHE 146
LNG L+L + + NL + ++ KPL S +K+ P +++ PNS P C + + + L +
Sbjct: 305 LNGDRILSLLKHSPNLQTLKLNEKPLRS---IKDQPNISVRKPNSVPECLTFHLETLEWQ 361
Query: 145 S-SGNFSSKNTSQFIEDNASKLTTTSTTAFIFDSQYHLLQQK 23
+G K + +I NA +L T + + + S++ Q+K
Sbjct: 362 GYAGRPEDKEIAVYILGNALRLNTATISRYFSSSRFRHHQKK 403
>At1g74170.1 68414.m08590 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
pimpinellifolium] gi|1184077|gb|AAC15780
Length = 1068
Score = 31.1 bits (67), Expect = 0.70
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 333 VQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEI 446
++F KH D GG +F L + ++ GE P E+
Sbjct: 830 IEFATKHRYDAYMGGNLKLLFGMDLSENELSGEIPVEL 867
>At1g74190.1 68414.m08592 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to Cf-2.1
[Lycopersicon pimpinellifolium] gi|1184075|gb|AAC15779
Length = 965
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +3
Query: 333 VQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYE 443
++F KH D GG +F L + ++ GE P E
Sbjct: 762 IEFATKHRYDAYMGGNLKLLFGMDLSENELSGEIPVE 798
>At2g36350.1 68415.m04461 protein kinase, putative similar to
protein kinase KIPK (KCBP-interacting protein kinase)
[Arabidopsis thaliana] gi|7716430|gb|AAF68383
Length = 949
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = +1
Query: 313 MRVNPWSSS----SLSNMNKTLTVEADTLRSLTANWSRRTCTERPHMRL 447
+R NP SS SLS+ N + T S +N SR +C +PHM +
Sbjct: 489 IRANPTSSEKFDFSLSSKNSLGDYSSSTSMSEESNLSRFSCGNKPHMSM 537
>At2g15695.1 68415.m01797 expressed protein contains Pfam PF05705:
Eukaryotic protein of unknown function (DUF829)
Length = 420
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -1
Query: 421 MSFCSSLQSKTLRYPPPQSMSCSCLTVNWTTKGLPSLLNGLNL 293
+ F S L K +P + MS V+W KG+ S L+GL L
Sbjct: 147 LDFTSDLNVKFALHPTIRRMSGPSRLVSWVAKGISSGLDGLYL 189
>At3g31540.1 68416.m04025 hypothetical protein
Length = 699
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = +3
Query: 513 KNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLXADWDFLPP 671
KN I + CKDD YT + + D E L+ + G L FL P
Sbjct: 252 KNMKIIEGFPCKDDAYTDYFFFVALEDAVLEDLVGKVLTKWGILDRPIRFLEP 304
>At1g60890.1 68414.m06855 phosphatidylinositol-4-phosphate 5-kinase
family protein similar to
phosphatidylinositol-4-phosphate 5-kinase AtPIP5K1
[Arabidopsis thaliana] GI:3702691; contains Pfam
profiles PF01504: Phosphatidylinositol-4-phosphate
5-Kinase, PF02493: MORN repeat
Length = 769
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -1
Query: 160 LLSHESSGNFSSKNTSQFIEDNASKLTTTS 71
LLSH S+ N TS+ + + S+LTTTS
Sbjct: 218 LLSHNSTINIDDLRTSKAVSRSLSELTTTS 247
>At3g56640.1 68416.m06298 exocyst complex subunit Sec15-like family
protein contains Pfam profile PF04091: Exocyst complex
subunit Sec15-like
Length = 789
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +3
Query: 513 KNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLXAD 653
KN KK+ +D TH IV D VL+D E+++S DL +D
Sbjct: 53 KNVARKKEAEIEDLCKTHYEEFIVAVDELRGVLVDAEELKS-DLASD 98
>At3g02885.1 68416.m00283 gibberellin-regulated protein 5 (GASA5) /
gibberellin-responsive protein 5 identical to GASA5
[Arabidopsis thaliana] GI:1289320
Length = 97
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/37 (40%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Frame = -1
Query: 427 PCMSFCSSLQSKTLRYPP---PQSMSCSCLTVNWTTK 326
PCM FC K L PP +C C NW TK
Sbjct: 55 PCMFFCLKCCKKCLCVPPGTFGNKQTCPCYN-NWKTK 90
>At5g06850.1 68418.m00774 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 669
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = -3
Query: 641 VARFNFLIVNEDFIG-VVRFHNQSVQMCVDIIFAADIFFDEMVLTLVTEDYMYLLGAWTT 465
V+ F LI ++G V + N + ++F I + E++L T YM+L+G W
Sbjct: 471 VSVFAGLIAMSKWLGDVCYWKNPLTTILFHVLFFILICYPELILP-TTFLYMFLIGLWNF 529
Query: 464 DVRAEH 447
R H
Sbjct: 530 RFRPRH 535
>At4g16410.1 68417.m02483 expressed protein contains Pfam PF05421:
Protein of unknown function (DUF751)
Length = 185
Score = 27.9 bits (59), Expect = 6.5
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = +1
Query: 265 KMRGSMLSP---VSSNRSVMRVNPWSSSSLSNMNKTLTVEADTLRSLTANWSRRTCTER 432
KMR S L P +S+RS+ + SSS+ N L R LT SR + ER
Sbjct: 8 KMRLSCLQPHLHFTSSRSIAAALAFPSSSIRNRTSCLVRCGSARRRLTTKSSRNSKLER 66
>At5g18620.2 68418.m02206 DNA-dependent ATPase, putative similar to
DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00249: Myb-like DNA-binding domain
Length = 1072
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = -3
Query: 434 GLSVHVLLLQFAVKDLKVSASTVNVLFMFDSELDDQGFTLITERFELTGESIEPRIFR 261
G V LL L ++ +T +V+ ++DS+ + Q +R G+ E ++FR
Sbjct: 561 GSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFR 618
>At5g18620.1 68418.m02205 DNA-dependent ATPase, putative similar to
DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00249: Myb-like DNA-binding domain
Length = 1069
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = -3
Query: 434 GLSVHVLLLQFAVKDLKVSASTVNVLFMFDSELDDQGFTLITERFELTGESIEPRIFR 261
G V LL L ++ +T +V+ ++DS+ + Q +R G+ E ++FR
Sbjct: 561 GSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFR 618
>At4g01050.1 68417.m00142 hydroxyproline-rich glycoprotein family
protein
Length = 466
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +3
Query: 417 DMHGETPYEIMFGPDICGPGTKKVHVIFSYKGKNHLIKK-DIRCKDDVYTHLYTL 578
D+ + + P+I G G K V +++ + K +KK ++ KD T LY L
Sbjct: 152 DIRATADFRQVGSPNIKGLGKKAVSTVYNGEDKPGFLKKLSLKFKDPENTTLYIL 206
>At3g06400.1 68416.m00738 DNA-dependent ATPase, putative similar to
DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00249: Myb-like DNA-binding domain
Length = 1055
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = -3
Query: 434 GLSVHVLLLQFAVKDLKVSASTVNVLFMFDSELDDQGFTLITERFELTGESIEPRIFR 261
G V LL L ++ +T +V+ ++DS+ + Q +R G+ E ++FR
Sbjct: 556 GSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFR 613
>At2g37070.1 68415.m04549 expressed protein
Length = 420
Score = 27.5 bits (58), Expect = 8.6
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 5/120 (4%)
Frame = -1
Query: 430 SPCMSFCSSLQSKTLRYPPPQSMSCS----CLTVNWTTKGLPSLLNGLNLRERA*NLAS- 266
+P + F S+L+S S SCS CL+V+ T PS+ + ++++ +AS
Sbjct: 164 TPVVPFKSALRSSVASKNELTS-SCSSIESCLSVSSTASNKPSIHSVKQKKDQSLRIASH 222
Query: 265 SEVFKPLSSSGSLKNFPAVNLNFPNSFPGCSLYTQLLSHESSGNFSSKNTSQFIEDNASK 86
S +P SS+GS +N L P G + + SS ++SS++ F + +K
Sbjct: 223 SLANRPKSSAGS-RNID--QLKVPPVSAGRTYKFNVSRLSSSVDWSSESPRAFTPNKMAK 279
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,955,421
Number of Sequences: 28952
Number of extensions: 366744
Number of successful extensions: 1054
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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