Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_J10
(801 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g47770.1 68418.m05901 farnesyl pyrophosphate synthetase 1, mi... 129 2e-30
At4g17190.1 68417.m02586 farnesyl pyrophosphate synthetase 2 (FP... 129 2e-30
At4g17190.2 68417.m02585 farnesyl pyrophosphate synthetase 2 (FP... 58 7e-09
At1g78510.1 68414.m09151 solanesyl diphosphate synthase (SPS) id... 33 0.17
At1g17050.1 68414.m02073 geranyl diphosphate synthase, putative ... 33 0.29
At5g22290.1 68418.m02599 no apical meristem (NAM) family protein... 28 8.3
At2g44880.1 68415.m05587 pentatricopeptide (PPR) repeat-containi... 28 8.3
At1g32230.2 68414.m03965 WWE domain-containing protein / ceo pro... 28 8.3
At1g32230.1 68414.m03964 WWE domain-containing protein / ceo pro... 28 8.3
>At5g47770.1 68418.m05901 farnesyl pyrophosphate synthetase 1,
mitochondrial (FPS1) / FPP synthetase 1 / farnesyl
diphosphate synthase 1 identical to SP|Q09152 Farnesyl
pyrophosphate synthetase 1, mitochondrial precursor (FPP
synthetase 1) (FPS 1) (Farnesyl diphosphate synthetase
1) [Includes: Dimethylallyltransferase (EC 2.5.1.1);
Geranyltranstransferase (EC 2.5.1.10)] {Arabidopsis
thaliana}
Length = 384
Score = 129 bits (311), Expect = 2e-30
Identities = 65/169 (38%), Positives = 100/169 (59%)
Frame = +3
Query: 291 LIRYKNNSANMTTASKNLEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQIGDWLKKMLHY 470
L R + S++M T K+ + + DLL + N+S+L W+ +ML Y
Sbjct: 32 LYRRRIQSSSMETDLKSTFLNVYSVLKSDLLHDPSFEFTNESRL--------WVDRMLDY 83
Query: 471 NLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLGWCVEMFQAYCIVLDDIMDGSSV 650
N+ GGK RG++ V S+K +++ +TE + ++C LGWC+E QAY +VLDDIMD S
Sbjct: 84 NVRGGKLNRGLSVVDSFKLLKQGNDLTEQEVFLSCALGWCIEWLQAYFLVLDDIMDNSVT 143
Query: 651 RRGMPCWYRRPEVGITCAFNDSLLIHSSLFEFLKTNFRTNPNYMKMFEL 797
RRG PCW+R P+VG+ A ND +L+ + + LK +FR P Y+ + +L
Sbjct: 144 RRGQPCWFRVPQVGMV-AINDGILLRNHIHRILKKHFRDKPYYVDLVDL 191
>At4g17190.1 68417.m02586 farnesyl pyrophosphate synthetase 2 (FPS2)
/ FPP synthetase 2 / farnesyl diphosphate synthase 2
identical to SP|Q43315 Farnesyl pyrophosphate synthetase
2 (FPP synthetase 2) (FPS 2) (Farnesyl diphosphate
synthetase 2) [Includes: Dimethylallyltransferase (EC
2.5.1.1); Geranyltranstransferase (EC 2.5.1.10)]
{Arabidopsis thaliana}
Length = 342
Score = 129 bits (311), Expect = 2e-30
Identities = 55/117 (47%), Positives = 81/117 (69%)
Frame = +3
Query: 447 WLKKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLGWCVEMFQAYCIVLD 626
WL++ML YN+ GGK RG++ V SYK +++ + +TE ++C LGWC+E QAY +VLD
Sbjct: 34 WLERMLDYNVRGGKLNRGLSVVDSYKLLKQGQDLTEKETFLSCALGWCIEWLQAYFLVLD 93
Query: 627 DIMDGSSVRRGMPCWYRRPEVGITCAFNDSLLIHSSLFEFLKTNFRTNPNYMKMFEL 797
DIMD S RRG PCW+R+P+VG+ A ND +L+ + + LK +FR P Y+ + +L
Sbjct: 94 DIMDNSVTRRGQPCWFRKPKVGM-IAINDGILLRNHIHRILKKHFREMPYYVDLVDL 149
>At4g17190.2 68417.m02585 farnesyl pyrophosphate synthetase 2 (FPS2)
/ FPP synthetase 2 / farnesyl diphosphate synthase 2
identical to SP|Q43315 Farnesyl pyrophosphate synthetase
2 (FPP synthetase 2) (FPS 2) (Farnesyl diphosphate
synthetase 2) [Includes: Dimethylallyltransferase (EC
2.5.1.1); Geranyltranstransferase (EC 2.5.1.10)]
{Arabidopsis thaliana}
Length = 247
Score = 58.0 bits (134), Expect = 7e-09
Identities = 24/55 (43%), Positives = 36/55 (65%)
Frame = +3
Query: 633 MDGSSVRRGMPCWYRRPEVGITCAFNDSLLIHSSLFEFLKTNFRTNPNYMKMFEL 797
MD S RRG PCW+R+P+VG+ A ND +L+ + + LK +FR P Y+ + +L
Sbjct: 1 MDNSVTRRGQPCWFRKPKVGM-IAINDGILLRNHIHRILKKHFREMPYYVDLVDL 54
>At1g78510.1 68414.m09151 solanesyl diphosphate synthase (SPS)
identical to solanesyl diphosphate synthase [Arabidopsis
thaliana] GI:19911233; contains Pfam profile PF00348:
Polyprenyl synthetase
Length = 406
Score = 33.5 bits (73), Expect = 0.17
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = +3
Query: 480 GGKHTR-GITTVISYKTIEKP---EKVTEHTLKMACKLGWCVEMFQAYCIVLDDIMDGSS 647
GGK R G+ ++S+ T E E TEH +L +EM ++ DD++D S
Sbjct: 124 GGKRMRPGLVFLVSHATAELAGLKELTTEHR-----RLAEIIEMIHTASLIHDDVLDESD 178
Query: 648 VRRG 659
+RRG
Sbjct: 179 MRRG 182
>At1g17050.1 68414.m02073 geranyl diphosphate synthase, putative /
GPPS, putative / dimethylallyltransferase, putative /
prenyl transferase, putative similar to GI:11322965;
Except for first 55 amino acids, 52% identical to Prenyl
transferase (Cyanophora paradoxa) (gi 99282). Location
of est 120E9T7 (gb|T43950)
Length = 417
Score = 32.7 bits (71), Expect = 0.29
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +3
Query: 480 GGKHTR-GITTVISYKTIEKPEKVTEHTLKMACKLGWCVEMFQAYCIVLDDIMDGSSVRR 656
GGK R G+ ++S T E + E T++ +LG +EM ++ DD++D S +RR
Sbjct: 135 GGKRMRPGLVFLVSRATAELAG-LKELTVEHR-RLGEIIEMIHTASLIHDDVLDESDMRR 192
Query: 657 G 659
G
Sbjct: 193 G 193
>At5g22290.1 68418.m02599 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain
Length = 340
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 315 ANMTTASKNLEIINEKKMFDDLLPEVIMTLQNKSKLSEVP 434
A M +S+NL++ N++ F D+L + I+ L P
Sbjct: 219 AEMAESSENLQVDNDEDFFADILRDEIINLDEAVMTGNTP 258
>At2g44880.1 68415.m05587 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 555
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = +3
Query: 411 KSKLSEVP--QIGDWLKKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLG 584
K E+P Q+ W M+H + G + ++ EKP+++T + AC G
Sbjct: 329 KRIFDEMPEKQVASW-NAMIHGYALNGNARAALDLFVTMMIEEKPDEITMLAVITACNHG 387
Query: 585 WCVE 596
VE
Sbjct: 388 GLVE 391
>At1g32230.2 68414.m03965 WWE domain-containing protein / ceo
protein, putative (CEO) contains Pfam domain, PF02825:
WWE domain; identical to cDNA for ceo protein (ceo gene)
GI:11044956
Length = 588
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 372 DDLLPEVIMTLQNKSKLSEVP 434
DDLL I TLQN+ K E+P
Sbjct: 555 DDLLRSTITTLQNQPKSKEIP 575
>At1g32230.1 68414.m03964 WWE domain-containing protein / ceo
protein, putative (CEO) contains Pfam domain, PF02825:
WWE domain; identical to cDNA for ceo protein (ceo gene)
GI:11044956
Length = 589
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 372 DDLLPEVIMTLQNKSKLSEVP 434
DDLL I TLQN+ K E+P
Sbjct: 556 DDLLRSTITTLQNQPKSKEIP 576
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,966,635
Number of Sequences: 28952
Number of extensions: 393405
Number of successful extensions: 1012
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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