Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_J09
         (486 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q54GM8 Cluster: Putative uncharacterized protein; n=4; ...    33   2.6  
UniRef50_Q09F50 Cluster: Ymf71; n=1; Tetrahymena paravorax|Rep: ...    32   7.9  

>UniRef50_Q54GM8 Cluster: Putative uncharacterized protein; n=4;
            Dictyostelium discoideum AX4|Rep: Putative
            uncharacterized protein - Dictyostelium discoideum AX4
          Length = 1469

 Score = 33.5 bits (73), Expect = 2.6
 Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = -1

Query: 183  IYKAHLYYSRRKCEN*LVKQNIINLSYSC-TDIPLLF 76
            IY   L+    +C++ LV  NI N+SYSC T++PL F
Sbjct: 929  IYITSLFNGLVECKSKLVSYNITNVSYSCATELPLGF 965


>UniRef50_Q09F50 Cluster: Ymf71; n=1; Tetrahymena paravorax|Rep:
           Ymf71 - Tetrahymena paravorax
          Length = 99

 Score = 31.9 bits (69), Expect = 7.9
 Identities = 17/53 (32%), Positives = 30/53 (56%)
 Frame = +3

Query: 15  VIEIMTIK*LQIRYILLLSN*KAKECRYSCKIN*LYFVLLVNFHIFFLNNINV 173
           +I  +TI  + +  I+LL   K  + +    IN + F++LV ++ FF  NIN+
Sbjct: 30  IIYYLTITLIILNIIILLFKLKQNKIKKKININIIIFLILVFWNFFFNININI 82


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 282,755,621
Number of Sequences: 1657284
Number of extensions: 4054746
Number of successful extensions: 7790
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7790
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 28130105105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)