Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_J09
         (486 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0004 - 59511-59576,59749-59806,60101-60144,60455-60512,608...    28   3.5  

>06_01_0004 -
           59511-59576,59749-59806,60101-60144,60455-60512,
           60810-60867,61165-61222,61871-61928,62225-62282,
           62579-62636,62933-62990,63285-63328,63639-63696,
           64699-64742,65053-65110,65407-65464,66114-66171,
           66468-66818,68051-68108,68405-68462,68759-68816,
           69113-69170,69466-69509,69820-70170,71048-71091,
           71755-71812,72109-72291,72463-72520,72815-72858,
           73877-73920,74584-74641,74938-74995,75292-75349,
           75643-75700,75997-76179,76351-76408,76702-76745,
           77056-77238,77410-77467,77766-77823,78120-78177,
           78473-78530,78826-78869,79180-79362,79534-79591,
           79885-79942,80239-80296,80592-80649,80946-81003,
           81652-81709,82361-82440,83067-83124,83421-83603,
           84127-84184,84480-84537,85188-85245,85541-85598,
           85895-85950
          Length = 1472

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 267 LKYFTFKLNYTCFVEFLV 320
           L+Y TF+ NY CFV ++V
Sbjct: 42  LRYSTFRRNYRCFVAYVV 59



 Score = 27.5 bits (58), Expect = 6.0
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 267 LKYFTFKLNYTCFVEFLVLNI 329
           L+Y TF+ NY CFV ++  ++
Sbjct: 161 LRYSTFRRNYRCFVAYVTTSL 181


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,680,522
Number of Sequences: 37544
Number of extensions: 84668
Number of successful extensions: 147
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)