BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fcaL-P02_F_J07 (719 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 31 0.17 SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||... 29 0.67 SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 28 1.2 SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo... 28 1.5 SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p... 28 1.5 SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.7 SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 27 2.7 SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 27 3.6 SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ... 26 4.7 SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB... 26 4.7 SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 26 6.2 SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa... 26 6.2 SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr... 26 6.2 SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz... 26 6.2 SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 6.2 SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm... 26 6.2 SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1 |Schizosa... 25 8.2 SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 25 8.2 SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 8.2 SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 8.2 >SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam3|Schizosaccharomyces pombe|chr 1|||Manual Length = 1082 Score = 31.1 bits (67), Expect = 0.17 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 1/75 (1%) Frame = +1 Query: 418 HSVTRLRMGPSRRRPEAPTVSYAESTATLIPTATNGSSPTSLVTL-ATLTSQTKRMNPKL 594 HS+T + + + Y+ S T+ T+ S TSL +L +TLTSQ N Sbjct: 582 HSITPSNTSYTSSLIPSSSTDYSSSLITVCSNVTSEISSTSLASLISTLTSQQISSNKSS 641 Query: 595 QHLTPPSATTEYRTT 639 + + TTEY T+ Sbjct: 642 EFV--GQTTTEYTTS 654 >SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1|||Manual Length = 753 Score = 29.1 bits (62), Expect = 0.67 Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 6/97 (6%) Frame = +1 Query: 445 PSRRRPEAPTVSYAESTATLIPTATNGSS---PTSLVTLATLTSQ---TKRMNPKLQHLT 606 P+R + YA+S+ +P+ + S PT+L + T TS ++R++ + Sbjct: 141 PNRIYGDRNRQDYAQSSRYTLPSLPSSPSYNCPTTLRKIHTNTSSNGTSRRVSGLGSFMA 200 Query: 607 PPSATTEYRTTPREWPPGQQPHDPPRRSSRTISXMPT 717 S+ T T + PG + +RSS T++ MP+ Sbjct: 201 QNSSETSSNRTSA-YLPGSSTDEQEKRSSVTLASMPS 236 >SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 1036 Score = 28.3 bits (60), Expect = 1.2 Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 3/103 (2%) Frame = +1 Query: 325 SFSPNHSRRGPSSLQCRLLETITR*TMMEALHSVTRLRMGPSRRRPEAP--TVSYAE-ST 495 S S S SSL T T ++ + S T L S + T S A+ +T Sbjct: 219 SNSATSSSLASSSLNSTTSATATSSSISSTVSSSTPLTSSNSTTAATSASATSSSAQYNT 278 Query: 496 ATLIPTATNGSSPTSLVTLATLTSQTKRMNPKLQHLTPPSATT 624 ++L+P++T S+P S T TS + + T SA++ Sbjct: 279 SSLLPSSTPSSTPLSSANSTTATSASSTPLTSVNSTTTTSASS 321 Score = 25.4 bits (53), Expect = 8.2 Identities = 16/68 (23%), Positives = 31/68 (45%) Frame = +1 Query: 421 SVTRLRMGPSRRRPEAPTVSYAESTATLIPTATNGSSPTSLVTLATLTSQTKRMNPKLQH 600 S T L S + + + +T++++PT++ S+P S T TS + + Sbjct: 387 SSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSANSTTATSASSTPLSSVNS 446 Query: 601 LTPPSATT 624 T SA++ Sbjct: 447 TTATSASS 454 Score = 25.4 bits (53), Expect = 8.2 Identities = 16/68 (23%), Positives = 31/68 (45%) Frame = +1 Query: 421 SVTRLRMGPSRRRPEAPTVSYAESTATLIPTATNGSSPTSLVTLATLTSQTKRMNPKLQH 600 S T L S + + + +T++++PT++ S+P S T TS + + Sbjct: 501 SSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSANSTTATSASSTPLTSVNS 560 Query: 601 LTPPSATT 624 T SA++ Sbjct: 561 TTATSASS 568 >SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizosaccharomyces pombe|chr 2|||Manual Length = 560 Score = 27.9 bits (59), Expect = 1.5 Identities = 21/80 (26%), Positives = 32/80 (40%) Frame = +1 Query: 436 RMGPSRRRPEAPTVSYAESTATLIPTATNGSSPTSLVTLATLTSQTKRMNPKLQHLTPPS 615 RM RRR A + S T + T G+SP +L+T T ++NP + Sbjct: 442 RMNEERRRLSAAATATPMSAPTSVLT---GTSPQPSPSLSTSIMSTPKLNPSESVVVASE 498 Query: 616 ATTEYRTTPREWPPGQQPHD 675 + +P+ P Q D Sbjct: 499 KASSPDLSPKLLPSESQIFD 518 >SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces pombe|chr 1|||Manual Length = 394 Score = 27.9 bits (59), Expect = 1.5 Identities = 15/41 (36%), Positives = 19/41 (46%) Frame = +1 Query: 535 TSLVTLATLTSQTKRMNPKLQHLTPPSATTEYRTTPREWPP 657 TSLV LT +T ++ LQ+L P A R W P Sbjct: 240 TSLVLCKPLTGRTHQLRVHLQYLGYPIANDPIYANKRVWGP 280 >SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 534 Score = 27.1 bits (57), Expect = 2.7 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Frame = +1 Query: 466 APTVSYAESTATLIPTATNGSSPTSLVTLATLTSQTKRMNP-KLQHLTPPSATT 624 +P SY++ + +P++T+ SPTS + T + ++P + PS+T+ Sbjct: 101 SPVSSYSDPATSQLPSSTSFFSPTSSEYTPSSTESSSLLDPSSVSSAILPSSTS 154 >SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 732 Score = 27.1 bits (57), Expect = 2.7 Identities = 16/42 (38%), Positives = 22/42 (52%) Frame = +1 Query: 463 EAPTVSYAESTATLIPTATNGSSPTSLVTLATLTSQTKRMNP 588 E+P VSY+ +L + +G SP SLV+ T S NP Sbjct: 76 ESP-VSYSNPIPSLTWLSLDGDSPDSLVSTPTAPSANHHGNP 116 >SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces pombe|chr 2|||Manual Length = 275 Score = 26.6 bits (56), Expect = 3.6 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Frame = +1 Query: 205 LEDRCTSSFRLTNTTPYIDRMTAKMKSMSRDQFSGCHP-GRSFSPNHSRRGP 357 L R S + +PY D + + R + P GRS SP++ RR P Sbjct: 113 LRSRSPSPHEARSRSPYNDERSDRRSMSPRYRSRSRSPDGRSRSPDYDRRSP 164 >SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 293 Score = 26.2 bits (55), Expect = 4.7 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 7/83 (8%) Frame = +1 Query: 316 PGRSFSPNHSRRG--PSSLQCRLLETITR*TMMEALHSVT---RLRM--GPSRRRPEAPT 474 P S + + +G PS +L +ITR E S + RL S+ + T Sbjct: 54 PNSSSNSTPANQGSLPSHTNPQLYSSITRKERPELFRSYSGNPRLSKPYASSKLAASSRT 113 Query: 475 VSYAESTATLIPTATNGSSPTSL 543 SY + ++ PT+TN S TSL Sbjct: 114 ASYQAMSYSVSPTSTNSSVATSL 136 >SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT |Schizosaccharomyces pombe|chr 1|||Manual Length = 588 Score = 26.2 bits (55), Expect = 4.7 Identities = 10/24 (41%), Positives = 13/24 (54%) Frame = -1 Query: 677 GSWGCWPGGHSRGVVRYSVVALGG 606 G W W +R ++RY V LGG Sbjct: 426 GFWRAWHRSFNRWLIRYIYVPLGG 449 >SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1016 Score = 25.8 bits (54), Expect = 6.2 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = +1 Query: 478 SYAESTATLIPTATNGSSPTSLVTLATLTSQTKRM 582 S S+ T PT T+ +PT T T T+Q+ M Sbjct: 844 SSTTSSITPTPTTTSSITPTPTTTSTTTTAQSTGM 878 >SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosaccharomyces pombe|chr 3|||Manual Length = 592 Score = 25.8 bits (54), Expect = 6.2 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = -2 Query: 487 PRTTQSVPLVSSLKDPSAAS*PNVKLPSSF 398 P+ +VP +S+ S AS PN+K S F Sbjct: 70 PKIPSAVPHISTPNPSSGASTPNIKRVSDF 99 >SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotransferase Eca39|Schizosaccharomyces pombe|chr 2|||Manual Length = 380 Score = 25.8 bits (54), Expect = 6.2 Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 2/83 (2%) Frame = -1 Query: 662 WPGG--HSRGVVRYSVVALGGVRCWSFGFILFVWLVRVARVTRDVGELPFVAVGINVAVL 489 WPGG H + Y+ L G+ +WL +VG + V IN Sbjct: 201 WPGGTGHYKLGGNYAPSVLPQKEAAKKGYAQILWLYGDEDYITEVGTMNCFTVWINKNGE 260 Query: 488 SAYDTVGASGLLLEGPIRSLVTE 420 T G++L G R + E Sbjct: 261 KEIITAPLDGMILPGVTRDSILE 283 >SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 676 Score = 25.8 bits (54), Expect = 6.2 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 3/31 (9%) Frame = -1 Query: 503 NVAVLSAYDTVGASGL---LLEGPIRSLVTE 420 ++ +++AYDT+G GL L E +R + TE Sbjct: 145 SMTIVTAYDTLGEEGLLHSLRESGVRGMYTE 175 >SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||Manual Length = 3971 Score = 25.8 bits (54), Expect = 6.2 Identities = 17/60 (28%), Positives = 29/60 (48%) Frame = +1 Query: 463 EAPTVSYAESTATLIPTATNGSSPTSLVTLATLTSQTKRMNPKLQHLTPPSATTEYRTTP 642 E+P+V+ + S+ T T TN S+P + ++ + T N T P T+ T+P Sbjct: 319 ESPSVALSTSSTT---TITNASTPAANTIISRSSKPTDTTNSISFANTTPENTSTQITSP 375 >SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1292 Score = 25.8 bits (54), Expect = 6.2 Identities = 15/38 (39%), Positives = 21/38 (55%) Frame = +1 Query: 406 MEALHSVTRLRMGPSRRRPEAPTVSYAESTATLIPTAT 519 MEAL R R+ + +P+VS A S A +IP +T Sbjct: 1224 MEALPERLRPRVKQRFMKIRSPSVSSATSVALMIPIST 1261 >SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 222 Score = 25.4 bits (53), Expect = 8.2 Identities = 14/43 (32%), Positives = 22/43 (51%) Frame = +3 Query: 378 IRNYNKVNDDGSFTFGYEAADGSFKEETRGTDCVVRGKYGYID 506 I+NY+K+N FG E AD E+ +C G+ G ++ Sbjct: 124 IKNYSKINILIKELFGLEVADCIEDEDGYRFNCKNTGRRGTLE 166 >SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces pombe|chr 2|||Manual Length = 2493 Score = 25.4 bits (53), Expect = 8.2 Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 2/56 (3%) Frame = -1 Query: 278 ILAVILS-IYGVVLVSRNELVHLSSSSAILGLVLIIVRVFHL-LQTRPGSSASGYP 117 I+ V++S I+ S NEL L S I G L+ + +F L TR GS S YP Sbjct: 270 IIPVLISTIHHCTSDSFNELEKLIISK-ITGEPLLYINLFKATLVTRKGSRVSDYP 324 >SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 800 Score = 25.4 bits (53), Expect = 8.2 Identities = 18/62 (29%), Positives = 27/62 (43%) Frame = +1 Query: 469 PTVSYAESTATLIPTATNGSSPTSLVTLATLTSQTKRMNPKLQHLTPPSATTEYRTTPRE 648 PT S + +T+T IPT + S T + TS + P PP++T+ T Sbjct: 223 PTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIP-----IPPTSTSSTDTNSSP 277 Query: 649 WP 654 P Sbjct: 278 LP 279 >SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual Length = 1236 Score = 25.4 bits (53), Expect = 8.2 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%) Frame = +1 Query: 421 SVTRLRMGPSRRRPEAPTVSYAESTATLIPTATNGSSP-TSLVTLATLTSQTKRMNPKLQ 597 SVT + S + T++ A S ATL A +GSS TS T ++ +S + + Sbjct: 1094 SVTAVSSTSSVEGTASSTIAAAASAATLSSDAASGSSTVTSSATASSSSSAATTADSSVT 1153 Query: 598 HLTP 609 TP Sbjct: 1154 TDTP 1157 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,779,354 Number of Sequences: 5004 Number of extensions: 55380 Number of successful extensions: 192 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 175 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 192 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 337208592 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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