Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_J07
         (719 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    29   0.058
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   2.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.2  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   5.1  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    21   8.9  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    21   8.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.9  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 28.7 bits (61), Expect = 0.058
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
 Frame = +3

Query: 393 KVNDDGSFTFGYEAADGSFKEET-------RGTDCVVRGKYGYIDPDGNKREFTYVS 542
           +VN DG++   +E ++G   +E+         T  V +G   Y  PDG +   TYV+
Sbjct: 35  EVNFDGNYINNFETSNGISHQESGQPKQVDNETPVVSQGSDSYTAPDGQQVSITYVA 91


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 620 VALGGVRCWSFGFIL 576
           + LGG+  W+FGF +
Sbjct: 72  IVLGGLTYWAFGFAM 86


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 16/49 (32%), Positives = 19/49 (38%)
 Frame = +1

Query: 523  GSSPTSLVTLATLTSQTKRMNPKLQHLTPPSATTEYRTTPREWPPGQQP 669
            GSSP+S V       Q   + P    L+P S T   R     WP    P
Sbjct: 1482 GSSPSSPVLSVRTQGQAPGIPPAATFLSPNSTTLVLRL--HVWPDNGCP 1528


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 16/49 (32%), Positives = 19/49 (38%)
 Frame = +1

Query: 523  GSSPTSLVTLATLTSQTKRMNPKLQHLTPPSATTEYRTTPREWPPGQQP 669
            GSSP+S V       Q   + P    L+P S T   R     WP    P
Sbjct: 1478 GSSPSSPVLSVRTQGQAPGIPPAATFLSPNSTTLVLRL--HVWPDNGCP 1524


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +1

Query: 535 TSLVTLATLTSQTKRMNPKLQHL 603
           TSL+TLAT  +Q+++  P + ++
Sbjct: 251 TSLLTLATQNTQSQQSLPPVSYV 273


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 190 PRIAELEDRCTSSFRLTNTTPYIDRM 267
           PR  EL D    ++ +TN+TP + ++
Sbjct: 200 PR-GELFDATVFTYNITNSTPLLKKL 224


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 190 PRIAELEDRCTSSFRLTNTTPYIDRM 267
           PR  EL D    ++ +TN+TP + ++
Sbjct: 215 PR-GELFDATVFTYNITNSTPLLKKL 239


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/20 (35%), Positives = 9/20 (45%)
 Frame = -2

Query: 241 WSAGTSWYTCPPALLSWAWF 182
           W  G S   C P  + + WF
Sbjct: 533 WLCGLSSMLCIPGYMIYIWF 552


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/20 (35%), Positives = 9/20 (45%)
 Frame = -2

Query: 241 WSAGTSWYTCPPALLSWAWF 182
           W  G S   C P  + + WF
Sbjct: 586 WLCGLSSMLCIPGYMIYIWF 605


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,425
Number of Sequences: 438
Number of extensions: 4103
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)