Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_J06
(819 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom... 260 2e-70
SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase |Schizosaccharom... 31 0.26
SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated |Schizosaccharom... 29 0.60
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch... 28 1.8
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 27 2.4
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 27 4.2
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch... 26 7.4
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 26 7.4
>SPAC6G10.08 |idp1||isocitrate dehydrogenase
Idp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 418
Score = 260 bits (636), Expect = 2e-70
Identities = 119/193 (61%), Positives = 150/193 (77%), Gaps = 2/193 (1%)
Frame = +3
Query: 243 PVVDILGDEMTRIIWDLIKEKLILPFLDIELHVYDLGMENRDKTDDQVTIDCAEAIKKYN 422
PVV++ GDEMTR+IW +I+EKL+LP++DI+L YDLG+E RDKT+DQ+T+D A+AI K +
Sbjct: 19 PVVEMDGDEMTRVIWKIIREKLVLPYMDIKLDYYDLGIEARDKTNDQITVDAAKAILKND 78
Query: 423 VGIKCATITPDEKRVEEFKLKKMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWDKPI 602
VGIKCATITPDE RV+E+ LKKMWKSPNGTIRNIL GTVFRE I+ KNIP+ + GW PI
Sbjct: 79 VGIKCATITPDEARVKEYNLKKMWKSPNGTIRNILNGTVFREPILIKNIPKYIPGWTNPI 138
Query: 603 IIGRHAHADQYKATDFVVPGAGTLEIIFKPESGEAIKHVXHXYK--GAGVXLAMFNTDAS 776
IGRHA DQYK+TD V G G LE+ F P+ + K + Y+ G+GV ++M+NTD S
Sbjct: 139 CIGRHAFGDQYKSTDLVASGPGKLELSFTPKGNPSAKETYNVYEFNGSGVAMSMYNTDDS 198
Query: 777 IIDXAHSSFKFAL 815
I AHSSF+ AL
Sbjct: 199 IRGFAHSSFQMAL 211
>SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 30.7 bits (66), Expect = 0.26
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +3
Query: 255 ILGDEMTRIIWDLIKEKLILPFLDIELHVYDL-GMENRDKTDDQVTIDCAEAIKKYNVGI 431
I GD + R + + E + IE D+ GME +K+ + +++K+ VG+
Sbjct: 26 IPGDGIGRETSNAVTEIFKTANVPIEFEEIDVTGMEKNNKSSGDALHEAIQSLKRNKVGL 85
Query: 432 KCATITPDEK 461
K TP EK
Sbjct: 86 KGILFTPFEK 95
>SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 351
Score = 29.5 bits (63), Expect = 0.60
Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 10/99 (10%)
Frame = -2
Query: 719 YMFYCLTRFRFEDYFKSTSTWDNKVSCF--------VLISMSMTSNDDGFVPPCYKSRYI 564
Y + C T F + K ++ + CF + I + +D GFV P Y YI
Sbjct: 243 YSYRCNTWFYLSKHMKKVASANMDAQCFYVQNSFYKITILYEIKFDDLGFVQPNYCISYI 302
Query: 563 LANNSLPENSTTKNITDGPIRAFPHFLQFKFF--NSLLI 453
L N + S T + + + F F+ F SLL+
Sbjct: 303 LKNQNEKIVSITSKLLNQLDKRFSEFVSLFGFREGSLLL 341
>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1001
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 118 LILPLRTHKRTYYQQN*LPAPFLNSIENEISSDTI 222
++ +R+HK + + LPA L+SI+N I S ++
Sbjct: 10 MLQSIRSHKNSKLENQRLPAILLHSIDNYIDSKSL 44
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 27.5 bits (58), Expect = 2.4
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = -2
Query: 374 SLITIFHTQVVDM*FNVQERKNQLFFDKIPDYSGHFITKDVNNRSSLYFRHIVSDDISFS 195
+L+ I +M NV+ R Q + I + S + + KD+ L + I+ D+ISFS
Sbjct: 376 ALVRIATGSAGEMYVNVETRSIQS--ENIGNVSLYVLDKDIEPPQPLLSQLILVDEISFS 433
Query: 194 IEFKKGAG 171
+ + G
Sbjct: 434 VRYLASLG 441
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 26.6 bits (56), Expect = 4.2
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = -2
Query: 656 DNKVSCFVLISMSMTSNDDGFVPPCYKSRYILANNSLPENSTTKNITD 513
D+K + L+S +++S + VPP KSR I+A+ + +S K+ D
Sbjct: 536 DSKQTKVSLMSENLSSKEKTAVPPRQKSRDIIASVTDVISSLDKDFQD 583
>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 840
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 610 PMMMGLSHPVTSLGIFLQIIASLKTVP 530
P +MG + VT+ ++ II SLK +P
Sbjct: 253 PALMGYKNKVTAKATYMVIIQSLKHLP 279
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 303 KLILPFLDIELHVYDLGMENRDKTDDQVTIDCAEAIK 413
+LI+ F D ELH + N+ + D AEA+K
Sbjct: 400 RLIMKFSDSELHTFLFHCVNKIVANTTENSDSAEAVK 436
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,246,472
Number of Sequences: 5004
Number of extensions: 68447
Number of successful extensions: 166
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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