Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_J06
(819 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0109 - 26526691-26526775,26526894-26527019,26527228-265273... 249 2e-66
05_07_0194 + 28327328-28327376,28327699-28327742,28327852-283279... 246 1e-65
01_01_1031 + 8169505-8169553,8169831-8169905,8170395-8170438,817... 221 4e-58
04_04_0457 + 25359486-25359571,25360690-25360782,25361561-253616... 116 6e-31
03_05_0311 + 23014666-23014806,23015454-23015959,23016661-230170... 30 2.5
02_05_0597 + 30245455-30245767,30246693-30246760,30246851-302469... 29 3.4
10_06_0105 - 10790092-10790323,10791092-10791234,10791322-107914... 29 5.9
10_01_0330 + 3614562-3614574,3614676-3615118,3617700-3617825,361... 29 5.9
08_02_0103 - 12400494-12400626,12400882-12400958 29 5.9
02_05_0979 + 33268294-33269595 29 5.9
>01_06_0109 -
26526691-26526775,26526894-26527019,26527228-26527370,
26527521-26527555,26527676-26527791,26527868-26527936,
26528070-26528173,26528253-26528338,26528429-26528530,
26528609-26528662,26528763-26528840,26528936-26528973,
26529235-26529344,26529463-26529506,26530232-26530280
Length = 412
Score = 249 bits (610), Expect = 2e-66
Identities = 118/198 (59%), Positives = 147/198 (74%), Gaps = 1/198 (0%)
Frame = +3
Query: 228 KIK-AGPVVDILGDEMTRIIWDLIKEKLILPFLDIELHVYDLGMENRDKTDDQVTIDCAE 404
KIK A P+V++ GDEMTRI W IK+KLI PFLD+++ YDLG+ +RD TDD+VT++ AE
Sbjct: 5 KIKVANPIVEMDGDEMTRIFWQSIKDKLIFPFLDLDIKYYDLGVLHRDATDDKVTVEAAE 64
Query: 405 AIKKYNVGIKCATITPDEKRVEEFKLKKMWKSPNGTIRNILGGTVFREAIICKNIPRLVT 584
A KYNV IKCATITPDE RV+EF LK+MWKSPNGTIRNI+ GTVFRE IICKN+PRLV
Sbjct: 65 ATLKYNVAIKCATITPDEARVKEFNLKQMWKSPNGTIRNIINGTVFREPIICKNVPRLVP 124
Query: 585 GWDKPIIIGRHAHADQYKATDFVVPGAGTLEIIFKPESGEAIKHVXHXYKGAGVXLAMFN 764
GW KPI IGRHA DQY+ATD V+ G G L+++F+ + + V + GV L+M+N
Sbjct: 125 GWTKPICIGRHAFGDQYRATDAVLKGPGKLKLVFEGKDEQIDLEVFNFTGAGGVALSMYN 184
Query: 765 TDASIIDXAHSSFKFALD 818
TD SI A +S A +
Sbjct: 185 TDESIRAFAEASMTTAYE 202
>05_07_0194 +
28327328-28327376,28327699-28327742,28327852-28327961,
28328250-28328287,28328371-28328448,28328527-28328580,
28328663-28328764,28329152-28329237,28329327-28329430,
28329542-28329610,28329689-28329804,28329949-28329983,
28330152-28330294,28330473-28330598,28330700-28330784
Length = 412
Score = 246 bits (603), Expect = 1e-65
Identities = 116/199 (58%), Positives = 146/199 (73%), Gaps = 1/199 (0%)
Frame = +3
Query: 225 SKIK-AGPVVDILGDEMTRIIWDLIKEKLILPFLDIELHVYDLGMENRDKTDDQVTIDCA 401
+KIK A P+V++ GDEMTR+ W IK+KLI PFL++++ +DLG+ RD+TDD+VT++ A
Sbjct: 4 TKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPYRDQTDDKVTVEAA 63
Query: 402 EAIKKYNVGIKCATITPDEKRVEEFKLKKMWKSPNGTIRNILGGTVFREAIICKNIPRLV 581
EA KYNV IKCATITPDE RV+EF LK MWKSPNGTIRNIL GTVFRE IICKNIPRLV
Sbjct: 64 EATLKYNVAIKCATITPDEARVKEFSLKSMWKSPNGTIRNILNGTVFREPIICKNIPRLV 123
Query: 582 TGWDKPIIIGRHAHADQYKATDFVVPGAGTLEIIFKPESGEAIKHVXHXYKGAGVXLAMF 761
GW KPI IGRHA DQY+ATD V+ G G L+++++ + E V + GV +M+
Sbjct: 124 PGWTKPICIGRHAFGDQYRATDAVIKGPGKLKLVYEGKDEEIELEVFNFTGAGGVAQSMY 183
Query: 762 NTDASIIDXAHSSFKFALD 818
NTD SI A +S A +
Sbjct: 184 NTDESIRSFAEASMATAYE 202
>01_01_1031 +
8169505-8169553,8169831-8169905,8170395-8170438,
8170633-8170742,8170960-8170997,8171055-8171186,
8171298-8171351,8171424-8171525,8172679-8172764,
8172870-8172973,8173056-8173124,8173156-8173209,
8173210-8173325,8173420-8173454,8173637-8173779,
8174105-8174227,8174305-8174398
Length = 475
Score = 221 bits (541), Expect = 4e-58
Identities = 114/202 (56%), Positives = 133/202 (65%), Gaps = 18/202 (8%)
Frame = +3
Query: 261 GDEMTRIIWDLIKEKLILPFLDIELHVYDLGMENRDKTDDQVTIDCAEAIKKYNVGIKCA 440
GDEMTR+IW IK+KLI PFLD+++ YDLG+ NRD T D+VTI+ AEA KYNV IKCA
Sbjct: 42 GDEMTRVIWKWIKDKLIFPFLDLDIKYYDLGLPNRDATGDKVTIESAEATLKYNVAIKCA 101
Query: 441 TITP------------------DEKRVEEFKLKKMWKSPNGTIRNILGGTVFREAIICKN 566
TITP DE RV+EF L MWKSPNGTIRNIL GTVFRE IICKN
Sbjct: 102 TITPVLDTQFKFDFGRTIHEPTDEGRVKEFNLSAMWKSPNGTIRNILNGTVFREPIICKN 161
Query: 567 IPRLVTGWDKPIIIGRHAHADQYKATDFVVPGAGTLEIIFKPESGEAIKHVXHXYKGAGV 746
IPRLV GW KPI IGRHA DQY+ATD V+ G G L+++F + V + GV
Sbjct: 162 IPRLVPGWIKPICIGRHAFGDQYRATDTVIKGPGKLKLVFDGREEQIELDVFNFTGAGGV 221
Query: 747 XLAMFNTDASIIDXAHSSFKFA 812
L+M+NTD SI A +S A
Sbjct: 222 ALSMYNTDESIWAFAEASMNMA 243
>04_04_0457 +
25359486-25359571,25360690-25360782,25361561-25361622,
25361758-25361816,25363624-25363733,25364795-25364829,
25365469-25365546,25365952-25366005,25366277-25366362,
25366468-25366571,25366986-25367054,25367135-25367250,
25367387-25367421,25367512-25367654,25367808-25367930,
25368463-25368556
Length = 448
Score = 116 bits (279), Expect(2) = 6e-31
Identities = 53/95 (55%), Positives = 72/95 (75%)
Frame = +3
Query: 300 EKLILPFLDIELHVYDLGMENRDKTDDQVTIDCAEAIKKYNVGIKCATITPDEKRVEEFK 479
+ LI P+L++++ +DLG+ NRD TDD+VT++ AEA T+T DE RV+EFK
Sbjct: 99 DDLIFPYLELDVKYFDLGLLNRDATDDKVTVESAEATLDLYSNSFFMTLT-DETRVKEFK 157
Query: 480 LKKMWKSPNGTIRNILGGTVFREAIICKNIPRLVT 584
LK MW+SPNGTIRNIL GTVFRE I+CKN+PR+++
Sbjct: 158 LKSMWRSPNGTIRNILNGTVFREPILCKNVPRILS 192
Score = 36.3 bits (80), Expect(2) = 6e-31
Identities = 18/46 (39%), Positives = 26/46 (56%)
Frame = +3
Query: 678 IIFKPESGEAIKHVXHXYKGAGVXLAMFNTDASIIDXAHSSFKFAL 815
I+ P+ E ++ + +KG GV L+M+N D SI A SS AL
Sbjct: 190 ILSVPDGAEPVELNVYNFKGPGVALSMYNVDESIRAFAESSMAMAL 235
>03_05_0311 +
23014666-23014806,23015454-23015959,23016661-23017051,
23017192-23017292,23017542-23017644,23018048-23018120,
23018244-23018659
Length = 576
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = -2
Query: 308 QLFFDKIPDYSGHFITKDVNNRSSLYFRHIVSDDISFSIEFKKG 177
+LF + + D + IT+D N R+ L + H+V + + F +E G
Sbjct: 357 RLFEEVLQDSTDFRITQDDNFRNGLKYHHVVDNRVVFLLESMPG 400
>02_05_0597 +
30245455-30245767,30246693-30246760,30246851-30246939,
30247047-30247212,30247296-30247585,30247692-30247896,
30248013-30248170,30248352-30248595
Length = 510
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = -3
Query: 595 LSHPVTSLGIFLQIIASLKTVPPRILRMVPLGLFH 491
+ H +TSL ++I L+ +PPR+ R V LG+FH
Sbjct: 165 VEHFITSLRDEVRI---LRELPPRVKRRVELGMFH 196
>10_06_0105 -
10790092-10790323,10791092-10791234,10791322-10791429,
10791796-10791903,10793133-10797686,10798347-10798461,
10799597-10799724,10799843-10800043,10800158-10800227,
10801233-10801314,10801433-10801556,10801761-10801778
Length = 1960
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +3
Query: 477 KLKKMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWDK 596
K++ W+ P I VFR NIP TGWDK
Sbjct: 69 KMEAFWRVPKWKIEKAKVKVVFRLQFHATNIPS--TGWDK 106
>10_01_0330 +
3614562-3614574,3614676-3615118,3617700-3617825,
3618379-3618786,3618871-3619311,3619399-3619779
Length = 603
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = -2
Query: 314 KNQLFFDKIPDYSGHFITKDVNNRSSLYFRHIVSDDISFSIEFKKGAGNQ 165
KN+ FD D GH I + R + + +H + S + + GA NQ
Sbjct: 54 KNENMFDSREDVQGHLIQRGFMERYTCWVKHGEQESGSGAAVDRSGAHNQ 103
>08_02_0103 - 12400494-12400626,12400882-12400958
Length = 69
Score = 28.7 bits (61), Expect = 5.9
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1
Query: 276 WSFHHQGCQQQVQP 235
WS HHQGCQ + P
Sbjct: 12 WSLHHQGCQPRALP 25
>02_05_0979 + 33268294-33269595
Length = 433
Score = 28.7 bits (61), Expect = 5.9
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +3
Query: 657 PGAGTLEIIFKPESGEAIKHVXHXYKGAGV-XLAMFNTDASIIDXAHSSFKFA 812
P GTLEIIF PE EA+ H Y V L +F +++ + F+
Sbjct: 381 PSVGTLEIIFSPED-EAVGE-YHDYSNNEVSTLGLFEESLALVGNTSENIVFS 431
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,247,583
Number of Sequences: 37544
Number of extensions: 448747
Number of successful extensions: 976
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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