Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_J06
         (819 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26442| Best HMM Match : Iso_dh (HMM E-Value=3.6e-37)               260   1e-69
SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0)                     236   2e-62
SB_9327| Best HMM Match : DUF1128 (HMM E-Value=9.5)                    33   0.37 
SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_33334| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.0  

>SB_26442| Best HMM Match : Iso_dh (HMM E-Value=3.6e-37)
          Length = 296

 Score =  260 bits (636), Expect = 1e-69
 Identities = 124/166 (74%), Positives = 140/166 (84%), Gaps = 2/166 (1%)
 Frame = +3

Query: 327 IELHVYDLGMENRDKTDDQVTIDCAEAIKKYNVGIKCATITPDEKRVEEFKLKKMWKSPN 506
           +EL  YDL +ENRD T+DQVTID A AIK+ +VGIKCATITPDEKRVEEFKLKKMWKSPN
Sbjct: 1   MELKSYDLSIENRDATNDQVTIDAAAAIKQCHVGIKCATITPDEKRVEEFKLKKMWKSPN 60

Query: 507 GTIRNILGGTVFREAIICKNIPRLVTGWDKPIIIGRHAHADQYKATDFVVPGAGTLEIIF 686
           GTIRNILGGTVFREAIICKNIPRLV+ W KPIIIGRHAHADQYKATDFVVPG G +EI++
Sbjct: 61  GTIRNILGGTVFREAIICKNIPRLVSPWTKPIIIGRHAHADQYKATDFVVPGPGKVEIVY 120

Query: 687 KP-ESGEAIKHVXHXYK-GAGVXLAMFNTDASIIDXAHSSFKFALD 818
            P + GE IK+  + +K G GV + MFNTD SI   AHSSF++ALD
Sbjct: 121 SPADGGEPIKYTVNEFKDGGGVTMGMFNTDVSIRAFAHSSFQYALD 166


>SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0)
          Length = 644

 Score =  236 bits (577), Expect = 2e-62
 Identities = 107/172 (62%), Positives = 135/172 (78%), Gaps = 1/172 (0%)
 Frame = +3

Query: 303 KLILPFLDIELHVYDLGMENRDKTDDQVTIDCAEAIKKYNVGIKCATITPDEKRVEEFKL 482
           +LI P+LD+++  +DLG+E+RD T+D+VT++ AEAI+K++VGIKCATITPDE RVEEFKL
Sbjct: 19  QLISPYLDLDIKYFDLGLEHRDATNDKVTVEAAEAIRKHHVGIKCATITPDEARVEEFKL 78

Query: 483 KKMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWDKPIIIGRHAHADQYKATDFVVPG 662
           KKMWKSPNGTIRNILGGTVFR  IICK +PRLV GW+KPI+IGRHA  DQY+A DF V G
Sbjct: 79  KKMWKSPNGTIRNILGGTVFRAPIICKTVPRLVPGWEKPIVIGRHAFGDQYRARDFAVNG 138

Query: 663 AGTLEIIFKPESGEAIKHVXHXYKG-AGVXLAMFNTDASIIDXAHSSFKFAL 815
            G+ EI F PESG  +      + G  GV + M+NTD +I D AHS  ++A+
Sbjct: 139 PGSFEISFTPESGGKLTTEVFEFTGTGGVMMGMYNTDEAIRDFAHSCMQYAI 190


>SB_9327| Best HMM Match : DUF1128 (HMM E-Value=9.5)
          Length = 287

 Score = 32.7 bits (71), Expect = 0.37
 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -2

Query: 287 PDYSGHFITKDVNN-RSSLYFRHIVSDDISFS 195
           P Y GHF+  D +  ++S Y+ H+V  DISFS
Sbjct: 161 PRYYGHFVITDTSLLQTSRYYGHLVITDISFS 192


>SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1378

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 17/63 (26%), Positives = 27/63 (42%)
 Frame = +3

Query: 351 GMENRDKTDDQVTIDCAEAIKKYNVGIKCATITPDEKRVEEFKLKKMWKSPNGTIRNILG 530
           G+ +RD   D + +     +K  + G  CATITP++ +         W +P    R   G
Sbjct: 336 GVIHRDIKSDNILLGMDGQVKLTDFGF-CATITPEQNKRSTMVGTPYWMAPEVVTRKQYG 394

Query: 531 GTV 539
             V
Sbjct: 395 PRV 397


>SB_33334| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 13/56 (23%), Positives = 27/56 (48%)
 Frame = +3

Query: 468 EEFKLKKMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWDKPIIIGRHAHADQY 635
           EE     M   P   +   +G +  ++  + +N+ RL+  +D P+++ R  H D +
Sbjct: 461 EELMNLNMKNGPQRLVSLDVGTSWDQKERVFRNLARLIGPYDDPVLVHRWVHGDAF 516


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,334,804
Number of Sequences: 59808
Number of extensions: 524515
Number of successful extensions: 1098
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2287608719
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)