Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_J05
(752 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P23396 Cluster: 40S ribosomal protein S3; n=174; Eukary... 383 e-105
UniRef50_Q59N00 Cluster: Likely cytosolic ribosomal protein S3; ... 250 2e-65
UniRef50_Q38EW1 Cluster: 40S ribosomal protein S3, putative; n=4... 238 9e-62
UniRef50_A2DIM3 Cluster: Ribosomal protein S3, putative; n=1; Tr... 214 2e-54
UniRef50_Q22AV9 Cluster: KH domain containing protein; n=3; Olig... 211 1e-53
UniRef50_A7NTL0 Cluster: Chromosome chr18 scaffold_1, whole geno... 203 4e-51
UniRef50_Q8SQM3 Cluster: 40S ribosomal protein S3; n=1; Encephal... 194 1e-48
UniRef50_A7NXL1 Cluster: Chromosome chr5 scaffold_2, whole genom... 167 2e-40
UniRef50_Q01BA3 Cluster: Putative ribosomal protein; n=1; Ostreo... 145 9e-34
UniRef50_Q7QNT9 Cluster: GLP_157_11435_12088; n=1; Giardia lambl... 139 6e-32
UniRef50_Q8U004 Cluster: 30S ribosomal protein S3P; n=5; Euryarc... 138 1e-31
UniRef50_Q8TRU1 Cluster: 30S ribosomal protein S3P; n=8; Euryarc... 125 1e-27
UniRef50_A3CT03 Cluster: 30S ribosomal protein S3P; n=4; Archaea... 124 2e-27
UniRef50_O26116 Cluster: 30S ribosomal protein S3P; n=3; Methano... 119 7e-26
UniRef50_P20281 Cluster: 30S ribosomal protein S3P; n=5; Halobac... 118 1e-25
UniRef50_Q6LXE7 Cluster: 30S ribosomal protein S3P; n=5; Methano... 116 5e-25
UniRef50_A1RXG6 Cluster: 30S ribosomal protein S3P; n=2; Thermof... 114 2e-24
UniRef50_Q8TX35 Cluster: 30S ribosomal protein S3P; n=1; Methano... 114 3e-24
UniRef50_UPI00015BB204 Cluster: SSU ribosomal protein S3P; n=1; ... 111 1e-23
UniRef50_O28360 Cluster: 30S ribosomal protein S3P; n=1; Archaeo... 107 4e-22
UniRef50_Q9UXA0 Cluster: 30S ribosomal protein S3P; n=2; Thermop... 103 6e-21
UniRef50_Q8LNX7 Cluster: Putative ribosomal protein S3; n=1; Zin... 101 2e-20
UniRef50_Q4JB46 Cluster: 30S ribosomal protein S3P; n=3; Sulfolo... 101 3e-20
UniRef50_A3DNB3 Cluster: 30S ribosomal protein S3P; n=1; Staphyl... 97 4e-19
UniRef50_Q8ZWI0 Cluster: 30S ribosomal protein S3P; n=6; Pyrobac... 95 1e-18
UniRef50_A0RVX9 Cluster: 30S ribosomal protein S3P; n=2; Thermop... 94 4e-18
UniRef50_A5DF25 Cluster: Putative uncharacterized protein; n=1; ... 93 9e-18
UniRef50_A3H696 Cluster: Ribosomal protein S3-like; n=1; Caldivi... 89 1e-16
UniRef50_UPI00005A35DE Cluster: PREDICTED: similar to 40S riboso... 88 3e-16
UniRef50_Q9HIR5 Cluster: 30S ribosomal protein S3P; n=4; Thermop... 87 4e-16
UniRef50_Q673S3 Cluster: Ribosomal protein S3; n=2; environmenta... 84 4e-15
UniRef50_A7NXL5 Cluster: Chromosome chr5 scaffold_2, whole genom... 69 9e-11
UniRef50_A5ATU8 Cluster: Putative uncharacterized protein; n=1; ... 66 7e-10
UniRef50_A7QEK7 Cluster: Chromosome chr17 scaffold_85, whole gen... 66 9e-10
UniRef50_Q3LWD3 Cluster: Ribosomal protein S3; n=1; Bigelowiella... 66 1e-09
UniRef50_Q74MZ4 Cluster: 30S ribosomal protein S3P; n=2; Nanoarc... 66 1e-09
UniRef50_Q9RXJ6 Cluster: 30S ribosomal protein S3; n=2; Deinococ... 64 5e-09
UniRef50_Q7MTL9 Cluster: 30S ribosomal protein S3; n=19; Bactero... 58 3e-07
UniRef50_Q6KI49 Cluster: 30S ribosomal protein S3; n=9; Mycoplas... 56 1e-06
UniRef50_A6EHQ8 Cluster: 30S ribosomal protein S3; n=1; Pedobact... 55 2e-06
UniRef50_Q12GW5 Cluster: 30S ribosomal protein S3; n=197; Bacter... 54 4e-06
UniRef50_A5B260 Cluster: Putative uncharacterized protein; n=1; ... 53 7e-06
UniRef50_A6R2L3 Cluster: Predicted protein; n=1; Ajellomyces cap... 52 2e-05
UniRef50_Q8KAH8 Cluster: 30S ribosomal protein S3; n=10; Chlorob... 50 5e-05
UniRef50_A1KB21 Cluster: 30S ribosomal protein S3; n=67; cellula... 50 6e-05
UniRef50_O83225 Cluster: 30S ribosomal protein S3; n=1; Treponem... 50 8e-05
UniRef50_Q7UN14 Cluster: 30S ribosomal protein S3; n=3; Planctom... 48 2e-04
UniRef50_P46772 Cluster: 30S ribosomal protein S3; n=5; Thermoto... 48 2e-04
UniRef50_A6NXD5 Cluster: Putative uncharacterized protein; n=1; ... 46 0.001
UniRef50_UPI00015BD7E8 Cluster: UPI00015BD7E8 related cluster; n... 45 0.002
UniRef50_Q6A6N2 Cluster: 30S ribosomal protein S3; n=27; Bacteri... 44 0.003
UniRef50_P0A4C3 Cluster: 30S ribosomal protein S3; n=39; Bacteri... 44 0.004
UniRef50_P56798 Cluster: Chloroplast 30S ribosomal protein S3; n... 44 0.005
UniRef50_P46247 Cluster: 30S ribosomal protein S3; n=3; Entomopl... 43 0.007
UniRef50_Q3ZZL8 Cluster: 30S ribosomal protein S3; n=18; Bacteri... 43 0.007
UniRef50_Q2JFH0 Cluster: 30S ribosomal protein S3; n=94; Bacteri... 43 0.009
UniRef50_Q9PQQ4 Cluster: 30S ribosomal protein S3; n=1; Ureaplas... 42 0.012
UniRef50_Q04G79 Cluster: 30S ribosomal protein S3; n=1; Oenococc... 42 0.012
UniRef50_Q2GED3 Cluster: 30S ribosomal protein S3; n=1; Neoricke... 41 0.029
UniRef50_Q20F10 Cluster: Chloroplast 30S ribosomal protein S3; n... 39 0.12
UniRef50_Q9XD30 Cluster: 30S ribosomal protein S3; n=4; Leptospi... 39 0.15
UniRef50_Q11HQ8 Cluster: 30S ribosomal protein S3; n=167; cellul... 38 0.20
UniRef50_A6XRQ3 Cluster: Putative uncharacterized protein; n=1; ... 38 0.27
UniRef50_A0MNG0 Cluster: Putative uncharacterized protein; n=1; ... 38 0.35
UniRef50_A7R9B1 Cluster: Chromosome undetermined scaffold_3592, ... 36 0.81
UniRef50_A5AUQ8 Cluster: Putative uncharacterized protein; n=1; ... 36 0.81
UniRef50_Q6YR15 Cluster: 30S ribosomal protein S3; n=163; Firmic... 36 0.81
UniRef50_A6GSD9 Cluster: TonB, C-terminal; n=1; Limnobacter sp. ... 36 1.4
UniRef50_Q9U982 Cluster: Drosophila dodeca-satellite protein 1; ... 35 2.5
UniRef50_Q9XDW7 Cluster: PsbAa; n=1; Rhodopseudomonas palustris|... 29 2.9
UniRef50_UPI0000DA2268 Cluster: PREDICTED: hypothetical protein;... 34 3.3
UniRef50_UPI000049839C Cluster: hypothetical protein 3.t00111; n... 34 3.3
UniRef50_Q5U794 Cluster: Signal recognition particle GTPase; n=1... 33 5.7
UniRef50_Q39682 Cluster: Glycine-rich protein; n=1; Daucus carot... 33 7.6
UniRef50_P36021 Cluster: Monocarboxylate transporter 8; n=24; Eu... 33 7.6
UniRef50_Q5SCB4 Cluster: Cyclin H; n=2; Ostreococcus|Rep: Cyclin... 33 10.0
UniRef50_A0DWV1 Cluster: Chromosome undetermined scaffold_67, wh... 33 10.0
UniRef50_Q5XIY2 Cluster: Transmembrane protein 56; n=8; Euteleos... 33 10.0
>UniRef50_P23396 Cluster: 40S ribosomal protein S3; n=174;
Eukaryota|Rep: 40S ribosomal protein S3 - Homo sapiens
(Human)
Length = 243
Score = 383 bits (942), Expect = e-105
Identities = 184/227 (81%), Positives = 197/227 (86%)
Frame = +3
Query: 66 RSENLFGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRI 245
+ DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+VLGEKGRRI
Sbjct: 7 KKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRI 66
Query: 246 RELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFI 425
RELT+VVQKRF PE SVELYAEKVATRGLCAIAQAESLRYKL+GGLAVRRACYGVLRFI
Sbjct: 67 RELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFI 126
Query: 426 MESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 605
MESGA+GCEVVVSGKLRGQRAKSMKFVDGLMIHSGDP N YV+TA RHVLLRQGVLGIKV
Sbjct: 127 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKV 186
Query: 606 KIMLPWDQQGKNGPXKPQPDHILVTEPKDEPVPLEPTXEVRSLAPAP 746
KIMLPWD GK GP KP PDH+ + EPKDE +P P E + P P
Sbjct: 187 KIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPISEQKGGKPEP 233
>UniRef50_Q59N00 Cluster: Likely cytosolic ribosomal protein S3;
n=4; Saccharomycetales|Rep: Likely cytosolic ribosomal
protein S3 - Candida albicans (Yeast)
Length = 251
Score = 250 bits (613), Expect = 2e-65
Identities = 123/213 (57%), Positives = 154/213 (72%)
Frame = +3
Query: 57 IFQRSENLFGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKG 236
I + + L DGVF AELNEF TRELAE GY+GVEVR TP + E+I+ A+ TQ VLGE+G
Sbjct: 5 ILSKKKKLVADGVFYAELNEFFTRELAEQGYAGVEVRKTPSKLEVIVKASNTQGVLGEQG 64
Query: 237 RRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVL 416
RRI ELTS++ KRF + + + +YAE+V RGL A QAE+L+ KL+ GL +RRA YGVL
Sbjct: 65 RRIHELTSLIVKRFKLSPEGIAIYAERVEERGLSAAVQAEALKAKLLSGLPIRRAAYGVL 124
Query: 417 RFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLG 596
RF M +GA+G EVV+SGKLR RAKS K+ DG MIHSG P D+++ A RHVL+RQGVLG
Sbjct: 125 RFAMGAGAKGVEVVISGKLRAARAKSQKYADGFMIHSGQPTRDFIDIAIRHVLMRQGVLG 184
Query: 597 IKVKIMLPWDQQGKNGPXKPQPDHILVTEPKDE 695
IKVKIM + GP + PD + + E KDE
Sbjct: 185 IKVKIMKD-PAANRFGP-RALPDAVKIAEAKDE 215
>UniRef50_Q38EW1 Cluster: 40S ribosomal protein S3, putative; n=4;
Trypanosoma|Rep: 40S ribosomal protein S3, putative -
Trypanosoma brucei
Length = 266
Score = 238 bits (583), Expect = 9e-62
Identities = 119/201 (59%), Positives = 150/201 (74%)
Frame = +3
Query: 87 DGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVV 266
DGVF AEL EFL RELA+DG++GVE RVTP R+EI+I +T+T+ VLGEKGRRIRELT+ +
Sbjct: 65 DGVFYAELFEFLKRELADDGFAGVEHRVTPTRTEIVIRSTKTREVLGEKGRRIRELTACL 124
Query: 267 QKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARG 446
Q+RFN E ++L+AE+V RGL A+AQAESLR+KL+ L VRRA G++R++MESGA+G
Sbjct: 125 QQRFNYKEGKLQLFAERVEVRGLSAMAQAESLRFKLLSNLQVRRAAMGIIRYVMESGAKG 184
Query: 447 CEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWD 626
CEV + GK++GQRAKSM F DG MI SG +V+TATRH LR G +G+ VKIM P
Sbjct: 185 CEVTIGGKIKGQRAKSMTFRDGYMIKSGTAHKHFVDTATRHCHLRAGTIGVNVKIMRP-- 242
Query: 627 QQGKNGPXKPQPDHILVTEPK 689
Q + PD I V EPK
Sbjct: 243 -QSMIEEDEVLPDVITVIEPK 262
>UniRef50_A2DIM3 Cluster: Ribosomal protein S3, putative; n=1;
Trichomonas vaginalis G3|Rep: Ribosomal protein S3,
putative - Trichomonas vaginalis G3
Length = 216
Score = 214 bits (523), Expect = 2e-54
Identities = 99/201 (49%), Positives = 139/201 (69%)
Frame = +3
Query: 90 GVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQ 269
G+F AELNE LTREL ++GY G EVR TP R+EIII A T+ + GRR++E+ ++Q
Sbjct: 16 GLFYAELNELLTRELTKEGYGGCEVRQTPTRTEIIIKAANTKEFVDNHGRRLQEVRMMIQ 75
Query: 270 KRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGC 449
KR+ + E S+E++ +++ +GL A+ Q ESLRYKLI + RRA Y ++RF+M++GARGC
Sbjct: 76 KRWRLKEDSLEIFIDRIQRKGLSALNQLESLRYKLIARIPARRAAYSIIRFVMDAGARGC 135
Query: 450 EVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQ 629
EV +SGKLRG RA + K+ +G M+ SGD +V A H+ ++Q +GI+V IML D
Sbjct: 136 EVAISGKLRGARASTSKYKEGYMVKSGDVTKQFVTQAVGHIPMKQATIGIRVLIMLAQDP 195
Query: 630 QGKNGPXKPQPDHILVTEPKD 692
G +GP + QPD I V E KD
Sbjct: 196 SGISGPKESQPDVIKVHEAKD 216
>UniRef50_Q22AV9 Cluster: KH domain containing protein; n=3;
Oligohymenophorea|Rep: KH domain containing protein -
Tetrahymena thermophila SB210
Length = 253
Score = 211 bits (516), Expect = 1e-53
Identities = 97/228 (42%), Positives = 150/228 (65%), Gaps = 2/228 (0%)
Frame = +3
Query: 66 RSENLFGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRI 245
+ + DGVF AEL+ F ++ L + GY+G+EVR TP ++EI I AT+ Q V+G +G++
Sbjct: 20 KKKKFVADGVFNAELHSFFSKSLQDAGYAGIEVRRTPTKTEIRIKATKPQQVIGVEGKKH 79
Query: 246 RELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFI 425
+ELT +QKRF + ++++AE + +GLCA AQ E++ YKL+ + VR A +++ +
Sbjct: 80 KELTQFLQKRFGYSDDQIQIWAEPIKFKGLCASAQVEAMNYKLLKDVPVRLAANYIIKSV 139
Query: 426 MESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 605
++ GA+GCE+++SGKL+ QRAK+MKF G MI +G P NDY++ A RHV +QG++G+KV
Sbjct: 140 IQDGAKGCEIIISGKLKQQRAKTMKFKQGYMICTGQPKNDYIDVAVRHVFFKQGIMGVKV 199
Query: 606 KIMLPWDQQ--GKNGPXKPQPDHILVTEPKDEPVPLEPTXEVRSLAPA 743
KIMLP++ K G P PD++++ PK E V PA
Sbjct: 200 KIMLPYEPNPAKKFGVKTPIPDNVIIHPPKQITDDKEIRTAVEQQQPA 247
>UniRef50_A7NTL0 Cluster: Chromosome chr18 scaffold_1, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr18 scaffold_1, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 617
Score = 203 bits (495), Expect = 4e-51
Identities = 117/200 (58%), Positives = 133/200 (66%)
Frame = +3
Query: 87 DGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVV 266
DGVF A LNE LTREL E+GYSG EVRVTP+ +EIII AT+T +VLGEKG++I+ELTSVV
Sbjct: 14 DGVFFAGLNEVLTRELVENGYSGDEVRVTPMCTEIIIRATQTHNVLGEKGKKIKELTSVV 73
Query: 267 QKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARG 446
QKRF E SVEL AEKV RG AIAQAESLRYKL+GGLA+
Sbjct: 74 QKRFEFLENSVELCAEKVNNRGFYAIAQAESLRYKLLGGLAM------------------ 115
Query: 447 CEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWD 626
L QRAKSMKF DG +I SG P DY++ A RHV LRQGVLGIKVKIM WD
Sbjct: 116 --------LCAQRAKSMKFKDGYLISSGQPVKDYIDLAVRHV-LRQGVLGIKVKIMFNWD 166
Query: 627 QQGKNGPXKPQPDHILVTEP 686
+GK P PD + + P
Sbjct: 167 PKGKQSLTTPLPDLVTIQTP 186
>UniRef50_Q8SQM3 Cluster: 40S ribosomal protein S3; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S3 -
Encephalitozoon cuniculi
Length = 228
Score = 194 bits (474), Expect = 1e-48
Identities = 89/207 (42%), Positives = 134/207 (64%)
Frame = +3
Query: 72 ENLFGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 251
E +G+ AEL EF + L +G+S +E+R+ +II+ + +GEK R+R+
Sbjct: 20 ERFMKNGLMNAELKEFFEKALVNEGFSTMELRMQETPIKIILKVAKPHEAIGEKKFRLRQ 79
Query: 252 LTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIME 431
+ +R +P++SVE+ EKV +GLCA+ QA +R K++GG+ RRA L+
Sbjct: 80 FQHLAAQRLEVPDESVEIVVEKVHEKGLCALIQANFIREKILGGVQYRRAVNMALKTARH 139
Query: 432 SGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 611
+ A+GC+++VSGKL+GQRAKS+KF DG++IHSGD DY+NT V +QGV+GI+V+I
Sbjct: 140 AKAQGCQIIVSGKLKGQRAKSVKFQDGVLIHSGDAVKDYINTGYATVETKQGVIGIQVRI 199
Query: 612 MLPWDQQGKNGPXKPQPDHILVTEPKD 692
MLP+D +G GP P PD I + EP +
Sbjct: 200 MLPYDPEGVLGPNYPLPDRITILEPSE 226
>UniRef50_A7NXL1 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr5 scaffold_2, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 243
Score = 167 bits (407), Expect = 2e-40
Identities = 91/154 (59%), Positives = 108/154 (70%)
Frame = +3
Query: 186 EIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLR 365
EIII AT+TQ+VLG+KGR+IRELTSVVQKRF E +VELYAEK R AIAQAESLR
Sbjct: 101 EIIIHATQTQNVLGKKGRKIRELTSVVQKRFEFLENNVELYAEKFNNRVFYAIAQAESLR 160
Query: 366 YKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCND 545
+KL+GGL VRRA YGVL F+MESG +GCEV+ +I SG P D
Sbjct: 161 FKLLGGLVVRRAGYGVLSFVMESGTKGCEVI----------------GWYIISSGQPVKD 204
Query: 546 YVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGP 647
Y+N+ RHVLL+QGVL IKVKI++ QG+ GP
Sbjct: 205 YINSVVRHVLLKQGVLSIKVKIIVRLGSQGQAGP 238
>UniRef50_Q01BA3 Cluster: Putative ribosomal protein; n=1;
Ostreococcus tauri|Rep: Putative ribosomal protein -
Ostreococcus tauri
Length = 145
Score = 145 bits (352), Expect = 9e-34
Identities = 66/108 (61%), Positives = 84/108 (77%)
Frame = +3
Query: 390 VRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRH 569
VR ACYGVLR+IMESGA+G EVVVSGKLRGQRAK+MKF DG MI SG+P DY+ + TRH
Sbjct: 30 VRSACYGVLRYIMESGAKGAEVVVSGKLRGQRAKAMKFKDGYMISSGNPVRDYIVSCTRH 89
Query: 570 VLLRQGVLGIKVKIMLPWDQQGKNGPXKPQPDHILVTEPKDEPVPLEP 713
LLRQG +G++VKIML D +G++GP P PD +++ PK++ +P
Sbjct: 90 ALLRQGTIGMRVKIMLDHDPKGRDGPSTPIPDTVVIHTPKEDEDMAKP 137
>UniRef50_Q7QNT9 Cluster: GLP_157_11435_12088; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_157_11435_12088 - Giardia lamblia
ATCC 50803
Length = 217
Score = 139 bits (337), Expect = 6e-32
Identities = 67/178 (37%), Positives = 110/178 (61%)
Frame = +3
Query: 87 DGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVV 266
D + +AEL+EF +REL + GY+ + T +II + V+G+ R+ ++ ++
Sbjct: 20 DCIMEAELHEFFSRELVDAGYASCSLCRTIDSICVIIQCAEPEVVMGDNHYRLHKIEYLL 79
Query: 267 QKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARG 446
RF ++ ++ +K+ RGL A ++LR KL + +RRA Y ++R M +GA G
Sbjct: 80 AGRFMCDPKNFNIWVDKIIKRGLSAEIMVDNLRAKLEEAMPIRRAAYSIIRTAMRAGAAG 139
Query: 447 CEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLP 620
CEV+V+GKLR QRA++ KF +G +I +G P ++ ATRH+ +RQGV+G+KV+I P
Sbjct: 140 CEVIVAGKLRAQRARANKFKEGCLISTGHPKRIFLAEATRHIKMRQGVIGVKVRIYNP 197
>UniRef50_Q8U004 Cluster: 30S ribosomal protein S3P; n=5;
Euryarchaeota|Rep: 30S ribosomal protein S3P -
Pyrococcus furiosus
Length = 210
Score = 138 bits (334), Expect = 1e-31
Identities = 71/171 (41%), Positives = 105/171 (61%)
Frame = +3
Query: 108 LNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIP 287
++EFL +EL GY G++++ TP+ +++II A V+G GRRIRELT +++K+F +
Sbjct: 17 IDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILEKQFGLE 76
Query: 288 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSG 467
+E+ E++ L A QA L L G+ RRA Y LR IM +GARG E+ +SG
Sbjct: 77 NPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRRAAYAALRAIMNNGARGVEIRLSG 134
Query: 468 KLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLP 620
KL G+RAKS++F G + G+P V+ LL+ GV+G+KV IM P
Sbjct: 135 KLTGERAKSIRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVAIMPP 185
>UniRef50_Q8TRU1 Cluster: 30S ribosomal protein S3P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S3P -
Methanosarcina acetivorans
Length = 318
Score = 125 bits (301), Expect = 1e-27
Identities = 74/230 (32%), Positives = 124/230 (53%), Gaps = 10/230 (4%)
Frame = +3
Query: 87 DGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVV 266
DG KA ++E+ +L+ GY G+E+ TP+ ++I+I + + V+G+ G+ IR+LT V
Sbjct: 10 DGYVKASMDEYFAEQLSRAGYGGMELNRTPMGTQIVIYSEKPGMVIGKAGKVIRKLTRDV 69
Query: 267 QKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARG 446
++++ ++ A++V L A A L + G R+A + LR +M +GA G
Sbjct: 70 ANKYSLENPQID--AQEVKRPELNAQMMASRLAASIERGWYFRKAGHNTLRAVMNAGALG 127
Query: 447 CEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI----- 611
CEVV+SGKL G R++ KFVDG + HSG+P + V+ + + G LG KV+I
Sbjct: 128 CEVVISGKLTGARSRVEKFVDGYIKHSGNPVEEVVDEGFAVAVKKLGTLGCKVRIIQPGV 187
Query: 612 MLPWDQQGKNGPXKPQPDHILVTEPKDEP-----VPLEPTXEVRSLAPAP 746
+LP + + +P +P ++P P + + R+ APAP
Sbjct: 188 VLPDSYKVRESVEVEEPAEKPAEKPAEKPAEKAAAPKKEAAKARAPAPAP 237
>UniRef50_A3CT03 Cluster: 30S ribosomal protein S3P; n=4;
Archaea|Rep: 30S ribosomal protein S3P - Methanoculleus
marisnigri (strain ATCC 35101 / DSM 1498 / JR1)
Length = 234
Score = 124 bits (300), Expect = 2e-27
Identities = 72/210 (34%), Positives = 113/210 (53%), Gaps = 1/210 (0%)
Frame = +3
Query: 87 DGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVV 266
DGV + +FLT+EL GY G+++ TP+ +++ I A + V+G+ G+++R+LT +
Sbjct: 10 DGVRNVRVEKFLTKELKRAGYGGMDIARTPLGTQVTIFAEKPGIVIGKGGKQVRQLTQDL 69
Query: 267 QKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARG 446
++I VE+ ++V A AE L L G R+A +R IMESGA G
Sbjct: 70 ATDYDIESPQVEV--QQVQNPNFNAQIMAERLANALERGWYFRKAGSSTIRRIMESGALG 127
Query: 447 CEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWD 626
CEV+V+GKL G R+++ KF +G + H G+P V + + G +G++VKI+ P
Sbjct: 128 CEVIVAGKLTGSRSRTQKFTEGYIKHCGEPSETIVEKGYALAIKKLGTIGVQVKIVPP-- 185
Query: 627 QQGKNGPXKPQPDHILVTEPKDEPV-PLEP 713
P +L EPK P P+EP
Sbjct: 186 -----DARLPDAFDVLEPEPKKAPAEPIEP 210
>UniRef50_O26116 Cluster: 30S ribosomal protein S3P; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S3P -
Methanobacterium thermoautotrophicum
Length = 258
Score = 119 bits (287), Expect = 7e-26
Identities = 67/212 (31%), Positives = 113/212 (53%)
Frame = +3
Query: 87 DGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVV 266
+G+ + ++E+L +EL GY G++V+VTP+ + +++ A R V+G G+ +R +T +
Sbjct: 9 EGLRRTRIDEYLEKELERAGYGGMDVQVTPMGTMVVVYAERPGMVIGRGGKTVRAITQKL 68
Query: 267 QKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARG 446
+ +F++ VE+ ++V L A + L G+ RR Y +R IM +GA+G
Sbjct: 69 KNKFDLENPQVEV--KEVDVPELNPKIMAHKIAAMLQRGMHFRRVAYTTMRRIMAAGAQG 126
Query: 447 CEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWD 626
EV +SGK+RG R+ + KF DG + G+P +V V L+ GVLG+ V+IM
Sbjct: 127 VEVTISGKIRGARSATAKFTDGYIKKCGEPSVKHVREGFATVQLKPGVLGVYVRIM---- 182
Query: 627 QQGKNGPXKPQPDHILVTEPKDEPVPLEPTXE 722
P PD + + +P+ P E E
Sbjct: 183 -----PPDVVLPDKVEIEDPRVTETPAEEASE 209
>UniRef50_P20281 Cluster: 30S ribosomal protein S3P; n=5;
Halobacteriaceae|Rep: 30S ribosomal protein S3P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 304
Score = 118 bits (285), Expect = 1e-25
Identities = 60/178 (33%), Positives = 109/178 (61%)
Frame = +3
Query: 87 DGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVV 266
DG+ + +++EF EL GY G++V TP+ ++I++ A + V+G+ G+ IR++T+ +
Sbjct: 10 DGLQRTQIDEFFAEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGKNIRKITTEL 69
Query: 267 QKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARG 446
+ RFN+ + V++ ++V L A A+ L L G R+A + + IMESGA G
Sbjct: 70 EDRFNLDDPQVDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTIDRIMESGALG 127
Query: 447 CEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLP 620
E+V+SGK+ G R++ KF G + H+G+P + V++ +++ G +G++VKI+ P
Sbjct: 128 AEIVLSGKVTGARSRVEKFNRGYVKHNGEPAEEIVDSGVGVAVMKLGTIGVRVKIIPP 185
>UniRef50_Q6LXE7 Cluster: 30S ribosomal protein S3P; n=5;
Methanococcus|Rep: 30S ribosomal protein S3P -
Methanococcus maripaludis
Length = 211
Score = 116 bits (280), Expect = 5e-25
Identities = 56/179 (31%), Positives = 101/179 (56%)
Frame = +3
Query: 84 GDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSV 263
G+ V + ++E+ +L GYS ++ + TPI + I + A + V+G KG+ ++ELT
Sbjct: 8 GENVSETLIDEYFKTKLVRAGYSHIDFKKTPIGTRITVFAEKPGFVIGRKGKMVKELTET 67
Query: 264 VQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGAR 443
+ +++ +E+ ++V L + L G+ R+ + +R +M SGA+
Sbjct: 68 LATEYSVKNPQIEV--KQVENPDLDPAVVGHKIASSLERGMHFRKTAHSAIRRVMGSGAK 125
Query: 444 GCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLP 620
G ++VSGKL G+R+++ KF+DG M H G+P VN + + L+ G++G+ VKIM P
Sbjct: 126 GVAIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVNKSHQLAKLKLGIVGVTVKIMRP 184
>UniRef50_A1RXG6 Cluster: 30S ribosomal protein S3P; n=2;
Thermofilum pendens Hrk 5|Rep: 30S ribosomal protein S3P
- Thermofilum pendens (strain Hrk 5)
Length = 202
Score = 114 bits (275), Expect = 2e-24
Identities = 64/184 (34%), Positives = 101/184 (54%)
Frame = +3
Query: 69 SENLFGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 248
+ + G+ LNE+L R+L Y + TPI +++I+ A V+G KG I+
Sbjct: 5 ARKVISQGLQYMMLNEYLQRQLVRANYVHAQFFKTPIGTKVIVYAGVPGLVIGRKGANIK 64
Query: 249 ELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 428
+ V+++ F I +++ +V + L A A + L+ G+ RRA L IM
Sbjct: 65 AIAEVLEREFGIENPQIDVV--EVPNQDLNAKIMAYRVARALVRGVRFRRAALVALNRIM 122
Query: 429 ESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVK 608
+GARG E+V+SGKL QR ++ KF G + SG+P + V+ A HVLL+ G+ G+KV+
Sbjct: 123 AAGARGAEIVISGKLTSQRHRTEKFTRGYVPKSGEPGEELVDEAIVHVLLKLGMYGVKVR 182
Query: 609 IMLP 620
IM P
Sbjct: 183 IMKP 186
>UniRef50_Q8TX35 Cluster: 30S ribosomal protein S3P; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S3P -
Methanopyrus kandleri
Length = 227
Score = 114 bits (274), Expect = 3e-24
Identities = 61/177 (34%), Positives = 101/177 (57%)
Frame = +3
Query: 90 GVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQ 269
G+ K EL+E+L EL GY G+ ++ P ++II R +G +GR IR + VQ
Sbjct: 18 GMLKTELDEYLEEELGRAGYGGMRLQRVPNATKIIAYVERPAIAIGRRGRNIRRVEEEVQ 77
Query: 270 KRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGC 449
+RF + + V + +++ + L A L L G+ RRA YG LR IM +GA+G
Sbjct: 78 ERFPLLGR-VSIEVKELPSPELNPRVVARRLASALERGIHFRRAAYGALRRIMNAGAKGA 136
Query: 450 EVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLP 620
+++SGKL G RA++ KF++G + + G+P ++Y+ + + G +G+ V+IM P
Sbjct: 137 MIILSGKLIGARARTEKFMEGAVKYCGEPGDEYMIEGYVQAVTKPGAIGVTVRIMPP 193
>UniRef50_UPI00015BB204 Cluster: SSU ribosomal protein S3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: SSU ribosomal protein
S3P - Ignicoccus hospitalis KIN4/I
Length = 241
Score = 111 bits (268), Expect = 1e-23
Identities = 65/171 (38%), Positives = 101/171 (59%)
Frame = +3
Query: 99 KAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRF 278
+ +++E+L + GYS VE++ TP+ + +II A R+ +++G +G+ I+++T V+++ F
Sbjct: 19 QVKVDEYLAYKFHSVGYSKVELQKTPMGTRVIIYAERSGAIIGRRGQTIKQITKVLEEWF 78
Query: 279 NIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVV 458
IP V + KV L A A L L G RRA Y LR IM +GA G +V
Sbjct: 79 GIPNPQVTVV--KVEEPELDARVMAFRLANALQRGFHFRRAAYTTLRRIMGAGAIGAQVK 136
Query: 459 VSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 611
VSGKLRG+RA+ K++ G + SG+ + A HVLL+ GV G++V I
Sbjct: 137 VSGKLRGERARFEKYIAGKVYKSGNQVVRLTDRAIAHVLLKVGVEGVEVII 187
>UniRef50_O28360 Cluster: 30S ribosomal protein S3P; n=1;
Archaeoglobus fulgidus|Rep: 30S ribosomal protein S3P -
Archaeoglobus fulgidus
Length = 229
Score = 107 bits (256), Expect = 4e-22
Identities = 62/174 (35%), Positives = 96/174 (55%)
Frame = +3
Query: 99 KAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRF 278
K + E++ E+ G+ GV++ TP+ +++ + R V+G+ GRRI+ LT + K F
Sbjct: 14 KLMVKEWIKDEVRSAGFGGVDILRTPLGTQVTLFVERPGLVIGKGGRRIKALTEKL-KDF 72
Query: 279 NIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVV 458
I V + ++V A A L L G RRA Y L IME+GA+GCE+
Sbjct: 73 GIENPQVSV--DEVEKPEFNAQLMASLLARALERGWYFRRAGYRFLYRIMEAGAKGCEIE 130
Query: 459 VSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLP 620
+SGKL +RA++ KFV G ++H+GDP V + + GVLG+ V+I+ P
Sbjct: 131 ISGKLVSERARTEKFVAGTIVHTGDPAESMVQKGFDIAIKKLGVLGVSVRIIPP 184
>UniRef50_Q9UXA0 Cluster: 30S ribosomal protein S3P; n=2;
Thermoprotei|Rep: 30S ribosomal protein S3P - Sulfolobus
solfataricus
Length = 229
Score = 103 bits (246), Expect = 6e-21
Identities = 62/198 (31%), Positives = 101/198 (51%), Gaps = 2/198 (1%)
Frame = +3
Query: 93 VFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQK 272
+ K +++E+L ++ Y+GVEV TPI + +II A R ++G GR I++L + +K
Sbjct: 13 IVKVKIDEYLAKQYYNAEYAGVEVLKTPIGTRVIIYAGRPSMIIGRGGRNIKQLAQIFEK 72
Query: 273 RFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCE 452
F + + + V L A A L L G RRA + +R IM +GA G E
Sbjct: 73 VFGLENPQITI--TNVENPELNARVMAFRLAIALEKGYHFRRAAFISMRRIMNAGALGAE 130
Query: 453 VVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQ 632
+++SGKL +RA+ K +G++ SG ++ A +L+ G+ G++V I P +
Sbjct: 131 IIISGKLTTERARYEKLKEGIVYKSGQQLEKMIDRAIAIAMLKPGIFGVEVVITKPLKIE 190
Query: 633 GK-NGPXKPQ-PDHILVT 680
K N P P + VT
Sbjct: 191 DKINLKESPSVPQEVSVT 208
>UniRef50_Q8LNX7 Cluster: Putative ribosomal protein S3; n=1; Zinnia
elegans|Rep: Putative ribosomal protein S3 - Zinnia
elegans (Zinnia)
Length = 143
Score = 101 bits (242), Expect = 2e-20
Identities = 45/70 (64%), Positives = 54/70 (77%)
Frame = +3
Query: 480 QRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPXKPQ 659
QRAKSMKF DG M+ SG P +Y+++A RHVLLRQGVLGIKVKIML WD GK GP P
Sbjct: 2 QRAKSMKFKDGYMVSSGQPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPTGKLGPKTPL 61
Query: 660 PDHILVTEPK 689
PD++++ PK
Sbjct: 62 PDNVVIHMPK 71
>UniRef50_Q4JB46 Cluster: 30S ribosomal protein S3P; n=3;
Sulfolobaceae|Rep: 30S ribosomal protein S3P -
Sulfolobus acidocaldarius
Length = 231
Score = 101 bits (241), Expect = 3e-20
Identities = 60/174 (34%), Positives = 93/174 (53%)
Frame = +3
Query: 99 KAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRF 278
K ++E+L ++ Y+GVE+ TPI + +II A R ++G+ G+ I++L V++K F
Sbjct: 15 KVMVDEYLAKQFYNAEYAGVEIVKTPIGTRVIIYAGRPPLIIGKGGKTIKQLAQVLEKFF 74
Query: 279 NIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVV 458
+ + + A + L A A L L G RRA + +R IM SGA G EV+
Sbjct: 75 GLENPQITVTAAE--NPELNARVMAFRLAIALEKGYHFRRAAFITIRRIMSSGAVGAEVI 132
Query: 459 VSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLP 620
VSGKL +RAK K +G + SG ++ A +L+ GV G++V I P
Sbjct: 133 VSGKLTSERAKYEKLKEGTVYKSGQQLEKIIDRAIGIAMLKPGVYGVEVVITKP 186
>UniRef50_A3DNB3 Cluster: 30S ribosomal protein S3P; n=1;
Staphylothermus marinus F1|Rep: 30S ribosomal protein
S3P - Staphylothermus marinus (strain ATCC 43588 / DSM
3639 / F1)
Length = 224
Score = 97.1 bits (231), Expect = 4e-19
Identities = 67/218 (30%), Positives = 110/218 (50%), Gaps = 4/218 (1%)
Frame = +3
Query: 99 KAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRF 278
K L+EFL + GY+G+E+ TP ++I A ++G G IR+L +++Q F
Sbjct: 17 KVMLDEFLANYFKDAGYAGMELYKTPTGYRVVIYAEYPGRIIGRGGSIIRKLMTIMQTHF 76
Query: 279 NIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVV 458
+ ++V + V L A A + L + RR +LR +ME+GA G E++
Sbjct: 77 GL--ENVNITVSPVPDPDLNARIVAFRIVRALEKEIPYRRVAMAMLRRVMEAGAVGAEII 134
Query: 459 VSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGK 638
+SGKLR +RA+ K G + +GD + V+ A LL++GV G++V I+ P
Sbjct: 135 ISGKLRSERARYEKLKAGRIYKAGDMVDYVVDRAVGKALLKRGVYGVEVVIVRP------ 188
Query: 639 NGPXKPQPDHILVTEPKDEP----VPLEPTXEVRSLAP 740
KP PD++ + K E +P+E S++P
Sbjct: 189 --HLKP-PDYVEIKSVKPEELADLIPVEKEETNESISP 223
>UniRef50_Q8ZWI0 Cluster: 30S ribosomal protein S3P; n=6;
Pyrobaculum|Rep: 30S ribosomal protein S3P - Pyrobaculum
aerophilum
Length = 218
Score = 95.5 bits (227), Expect = 1e-18
Identities = 51/169 (30%), Positives = 91/169 (53%), Gaps = 1/169 (0%)
Frame = +3
Query: 108 LNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIP 287
+ EFL L++ GY E+ TP+ + I+I A R ++G KG ++E+++++ + +
Sbjct: 24 IKEFLEYRLSKYGYIDSEILKTPLGTRIVIYAERPSRIIGRKGAIVKEISNILTTKLGVE 83
Query: 288 EQSVELY-AEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 464
+++ K+ + A + + G+ RR + +R +ME+GA+G E+VVS
Sbjct: 84 NPQIDVIDISKIEAPEMFPKVVAYRIANAMAKGVRFRRVMFVAIRQLMEAGAKGFEIVVS 143
Query: 465 GKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 611
GKL +RA+ K G + G + V A HVLL+ G+ GI+V+I
Sbjct: 144 GKLSTERARFEKQTYGKLYKIGYDAKNRVRRAVVHVLLKPGIYGIEVRI 192
>UniRef50_A0RVX9 Cluster: 30S ribosomal protein S3P; n=2;
Thermoprotei|Rep: 30S ribosomal protein S3P -
Cenarchaeum symbiosum
Length = 261
Score = 93.9 bits (223), Expect = 4e-18
Identities = 69/220 (31%), Positives = 109/220 (49%), Gaps = 6/220 (2%)
Frame = +3
Query: 105 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 284
+L EFL + + G+SGVEV P ++I + TR V+G KG IRELT ++K F++
Sbjct: 16 KLREFLRENIKDSGFSGVEVEKNPRGTKITLHVTRPGIVIGRKGVGIRELTERLEKDFDL 75
Query: 285 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIME-SGARGCEVVV 461
V++ +++ T L + + G A RRA ++ IME A G ++ +
Sbjct: 76 KSPQVDV--KEIETPELYPGVMCNRMASHIERGTAFRRATMWTIQQIMEKKDAMGVQITI 133
Query: 462 SGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKN 641
SGKLRG R+ K G++ +G + V HV G++GI+++I D+ K+
Sbjct: 134 SGKLRGDRSAFEKHTSGILPRAGHYADVIVLDDVVHVKTPMGLIGIRIRIARR-DKFRKD 192
Query: 642 GPXKPQPDHILVTEP-----KDEPVPLEPTXEVRSLAPAP 746
K + D + +P KDE P T E + A AP
Sbjct: 193 FEMKAEKDVVPAPKPEHHDVKDETDPSAGT-EAKDGAAAP 231
>UniRef50_A5DF25 Cluster: Putative uncharacterized protein; n=1;
Pichia guilliermondii|Rep: Putative uncharacterized
protein - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 278
Score = 92.7 bits (220), Expect = 9e-18
Identities = 59/207 (28%), Positives = 103/207 (49%)
Frame = -1
Query: 695 LVLGLCHQDXXXXXXXXXXXXXXVPRQHDFDLDS*YSLSEKHMSGSSVDVIITRVSRVDH 516
L+LGL QD V H+ D D+ +LS +H+S +V+ ++ ++RVDH
Sbjct: 57 LILGLGDQDSIGQSLRANSGGSWV--LHNLDSDTQNTLSHQHVSDGNVNKVVGWLTRVDH 114
Query: 515 ESIYKLH*FGTLTTQLARYNNFTTTGTRFHDETENTIASTTYSETSDKLVS*RFGLGDSA 336
E++ L G+ ++Q +N T T H ++++T+ +++ +T +L FGL S
Sbjct: 115 ETVRVLLRLGSSSSQFTGDDNLHTLSTSSHGKSQHTVGGSSHWQTVQQLGFQGFGLDSSG 174
Query: 335 KTTSSHLFSIQFYRLLWNVESLLYYGSQLTDSASFLSEHTLCPGGHNNDLRADGSDPHFH 156
+T+ + +ESL G QL DS S S++TL G +N+L+ +
Sbjct: 175 QTSLLDSLGVDDNSFRRQLESLDNQGGQLVDSTSLFSQNTLGVGSLDNNLQLGWGLSDLN 234
Query: 155 AGVAVLGQLPSEELIEFRLENPISKQI 75
GV + Q EE ++ +E+ IS Q+
Sbjct: 235 TGVTLFSQFSGEEFVQLGVEDTISYQL 261
>UniRef50_A3H696 Cluster: Ribosomal protein S3-like; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S3-like -
Caldivirga maquilingensis IC-167
Length = 226
Score = 89.0 bits (211), Expect = 1e-16
Identities = 50/209 (23%), Positives = 107/209 (51%)
Frame = +3
Query: 72 ENLFGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 251
+ + D K + E+L L + Y ++ T + + I+I+A + ++G KG++++
Sbjct: 3 KRIIDDNKKKWMIKEYLNIALTRNRYVDSIIQRTTLGTRIVIIAEKKNRIIGRKGQQVKA 62
Query: 252 LTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIME 431
L +++ +FN+ +++ E +A + + G+ RRA LR + E
Sbjct: 63 LADILKSKFNLDNVVIDVIQEPHPEYNARLVALR--IADAMAKGIRFRRAAIIALRQLQE 120
Query: 432 SGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 611
+ +G EV++SGKL +R++ K+ G++I +G + V A VLL+ G+ ++V++
Sbjct: 121 ANVQGAEVIISGKLTTERSRFEKYTTGIVIKAGQDALEKVQEAVIPVLLKPGIFSVRVRV 180
Query: 612 MLPWDQQGKNGPXKPQPDHILVTEPKDEP 698
LP D + + P+ + V + +++P
Sbjct: 181 -LPPDAKLSDRFEVKSPEEVQVKQIENKP 208
>UniRef50_UPI00005A35DE Cluster: PREDICTED: similar to 40S ribosomal
protein S3; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to 40S ribosomal protein S3 - Canis familiaris
Length = 161
Score = 87.8 bits (208), Expect = 3e-16
Identities = 43/69 (62%), Positives = 50/69 (72%)
Frame = +3
Query: 423 IMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIK 602
+ ESGA+G E +VSGKL+GQRAKS KFVD MIHS D N YV+T+ HVLLRQGVLG K
Sbjct: 80 VQESGAKGYEAMVSGKLQGQRAKSAKFVDDSMIHSRDCVNHYVDTSVHHVLLRQGVLGSK 139
Query: 603 VKIMLPWDQ 629
+ P Q
Sbjct: 140 CRSCFPGTQ 148
Score = 82.6 bits (195), Expect = 9e-15
Identities = 39/56 (69%), Positives = 45/56 (80%)
Frame = +3
Query: 66 RSENLFGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEK 233
+ DG+F+AELNEFLTRELAEDG S VEVRVTP + EIII+ TRTQ+VLGEK
Sbjct: 7 KKRQFVADGIFRAELNEFLTRELAEDGDSRVEVRVTPTKPEIIILTTRTQNVLGEK 62
>UniRef50_Q9HIR5 Cluster: 30S ribosomal protein S3P; n=4;
Thermoplasmatales|Rep: 30S ribosomal protein S3P -
Thermoplasma acidophilum
Length = 225
Score = 87.0 bits (206), Expect = 4e-16
Identities = 47/185 (25%), Positives = 97/185 (52%)
Frame = +3
Query: 66 RSENLFGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRI 245
+ + V + + E++ +E G+ + ++ TP + I + R V+G +G ++
Sbjct: 2 KERKFINEAVKRLLVCEYVVKETENAGFGNMVMKRTPFGTNITLYVNRPGLVIGRRGSKV 61
Query: 246 RELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFI 425
+++T ++K++ I +E+ + V L A+ + L G + R+A L
Sbjct: 62 QQMTDTLEKKYGIETPQIEV--KDVKDPDLNPSVIAKKIALSLEKGWSYRKAGNTSLNRT 119
Query: 426 MESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 605
+++GA+G + +SGK+ G+RA+ KF+ G + +SG+P + + T L+ G+LG+ V
Sbjct: 120 IQAGAKGVLIKISGKISGERARYQKFIYGNVKYSGEPGSKGMITGFSTAKLKVGILGVTV 179
Query: 606 KIMLP 620
KI+ P
Sbjct: 180 KILNP 184
>UniRef50_Q673S3 Cluster: Ribosomal protein S3; n=2; environmental
samples|Rep: Ribosomal protein S3 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 307
Score = 83.8 bits (198), Expect = 4e-15
Identities = 49/171 (28%), Positives = 86/171 (50%)
Frame = +3
Query: 108 LNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIP 287
+ E+L RE G+ G+E TP +++ + A + V+G +G+ I EL ++ F +
Sbjct: 21 VREYLLRETERAGFGGLEFNRTPEGTKVTLSAEQVGRVIGRRGKVIHELQYRLKSDFKLE 80
Query: 288 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSG 467
+E+ ++ L A A L L G RRA + + IM++GARGC +++SG
Sbjct: 81 NPRLEV--NEIEEPRLNAQVMASRLASSLERGWFFRRAGHSTAQNIMDAGARGCLIILSG 138
Query: 468 KLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLP 620
K+ G R + KF G + G+ +++ + + G +G V+IM P
Sbjct: 139 KISGPRHRVQKFQQGHIKFCGETALQFMDEGFSTAVKKLGTVGCTVRIMRP 189
>UniRef50_A7NXL5 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr5 scaffold_2, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 149
Score = 69.3 bits (162), Expect = 9e-11
Identities = 33/45 (73%), Positives = 39/45 (86%)
Frame = +3
Query: 129 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSV 263
+++EDGYSGV+VRVTP+R EIII ATRTQ+ LGEK RRIREL V
Sbjct: 16 DISEDGYSGVQVRVTPMRMEIIIHATRTQNALGEKRRRIRELILV 60
>UniRef50_A5ATU8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 286
Score = 66.5 bits (155), Expect = 7e-10
Identities = 31/46 (67%), Positives = 38/46 (82%)
Frame = +3
Query: 129 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVV 266
++ EDGYS V+VRVTP+ EII+ ATRTQ+ L EKGRRIRELT V+
Sbjct: 139 DILEDGYSNVKVRVTPMGMEIIVRATRTQNALSEKGRRIRELTLVM 184
>UniRef50_A7QEK7 Cluster: Chromosome chr17 scaffold_85, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr17 scaffold_85, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 514
Score = 66.1 bits (154), Expect = 9e-10
Identities = 32/45 (71%), Positives = 37/45 (82%)
Frame = +3
Query: 129 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSV 263
++ EDGYS V+VRVTP+ EIII ATRTQ+ L EKGRRIRELT V
Sbjct: 406 DILEDGYSDVKVRVTPMGMEIIIRATRTQNALSEKGRRIRELTLV 450
Score = 42.7 bits (96), Expect = 0.009
Identities = 19/32 (59%), Positives = 26/32 (81%)
Frame = +3
Query: 129 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVL 224
++ EDGYS ++V+VT +R EIII ATRTQ+ L
Sbjct: 281 DIPEDGYSDIKVKVTGMRMEIIIHATRTQNAL 312
>UniRef50_Q3LWD3 Cluster: Ribosomal protein S3; n=1; Bigelowiella
natans|Rep: Ribosomal protein S3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 262
Score = 65.7 bits (153), Expect = 1e-09
Identities = 32/120 (26%), Positives = 64/120 (53%), Gaps = 1/120 (0%)
Frame = +3
Query: 258 SVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKL-IGGLAVRRACYGVLRFIMES 434
+++ F I +++ + + + + Q+ ++ + R + LRF++ S
Sbjct: 112 NIISHLFFINSNKLKILYKNYKSSNISTMTQSSRMKEAFNYTNKSFRSIIFNTLRFLINS 171
Query: 435 GARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIM 614
G RGC + + G R +R K+ KF GL+ HSG ND++++ + ++ ++G LGI +KIM
Sbjct: 172 GVRGCMIKLKGVYRSKRTKTFKFRRGLISHSGIQNNDWIDSDSFYLNKKRGTLGINIKIM 231
>UniRef50_Q74MZ4 Cluster: 30S ribosomal protein S3P; n=2;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S3P -
Nanoarchaeum equitans
Length = 230
Score = 65.7 bits (153), Expect = 1e-09
Identities = 51/170 (30%), Positives = 82/170 (48%), Gaps = 1/170 (0%)
Frame = +3
Query: 114 EFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQ 293
EF+ L S V +R TPI + +II + R + + E R L +++ +F + +
Sbjct: 21 EFIRLYLRGANVSKVIIRQTPIVNRVIIYSARPKMISEE---RKAHLAKLLELKFGLEKP 77
Query: 294 SVELYAEKVATRGLCAIAQAESLRYKLIGGL-AVRRACYGVLRFIMESGARGCEVVVSGK 470
+E+ + L A AE L + + A RR L IM +GA G E+V++G+
Sbjct: 78 VIEVLP--IENPNLDAHVIAERLAMGIERNIRAYRRLAQRYLETIMNAGAIGAEIVIAGR 135
Query: 471 LRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLP 620
L GQR K+ +F G + +G ++ A L+ GV GI V I+ P
Sbjct: 136 LSGQRGKTWRFKAGNLRKTGTIGQFELDRAFNIAYLKPGVAGIHVTILKP 185
>UniRef50_Q9RXJ6 Cluster: 30S ribosomal protein S3; n=2;
Deinococcus|Rep: 30S ribosomal protein S3 - Deinococcus
radiodurans
Length = 249
Score = 63.7 bits (148), Expect = 5e-09
Identities = 45/171 (26%), Positives = 89/171 (52%), Gaps = 2/171 (1%)
Frame = +3
Query: 105 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 284
++ + + ++LA G + +E+ + +II A + V+G+ G I+EL +++ +
Sbjct: 38 QIRQLINKKLAAAGIARIEIERAGQQVNVIISAAKPGVVIGKGGESIKELRGDIERL--V 95
Query: 285 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 464
+V + ++ + A A + ++ A RRA + +MESGARG +V++S
Sbjct: 96 SAGTVAVNVAEIPNPNISAPLVALRIAEQIERRFAFRRAMKQAAQRVMESGARGVKVILS 155
Query: 465 GKLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 611
G+L G ++A++ K ++G + +H+ DY R G+LGIKV +
Sbjct: 156 GRLGGAEQARTEKVLEGRVPLHTLRADIDYGTALAR---TTYGILGIKVLV 203
>UniRef50_Q7MTL9 Cluster: 30S ribosomal protein S3; n=19;
Bacteroidetes|Rep: 30S ribosomal protein S3 -
Porphyromonas gingivalis (Bacteroides gingivalis)
Length = 246
Score = 57.6 bits (133), Expect = 3e-07
Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 2/172 (1%)
Frame = +3
Query: 102 AELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFN 281
+ + ++L LA+ S + + I I R ++G+ G+ + +L +++
Sbjct: 36 SRIRQYLNARLAKASVSRIVIERALKLVTITICTARPGMIIGKAGQEVDKLKEELKR--- 92
Query: 282 IPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVV 461
I ++ V++ ++ L A AE++ +L G +A RRA + M GA G ++ V
Sbjct: 93 ITKKDVQINIYEIRKPELDAAIVAENIARQLEGKIAYRRAVKMAIASAMRMGAEGIKIQV 152
Query: 462 SGKLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 611
SG+L G + A+S F +G +H+ DY A L + G+LGIKV I
Sbjct: 153 SGRLNGAEMARSEMFKEGRTPLHTLRADIDY---ALAEALTKVGLLGIKVWI 201
>UniRef50_Q6KI49 Cluster: 30S ribosomal protein S3; n=9;
Mycoplasma|Rep: 30S ribosomal protein S3 - Mycoplasma
mobile
Length = 225
Score = 55.6 bits (128), Expect = 1e-06
Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 2/141 (1%)
Frame = +3
Query: 189 IIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRY 368
+++ + + ++LG+ G I +LT +QK E + + + L AI AE +
Sbjct: 67 VLVHSAKPGAILGQNGENINKLTQDIQKLLRNKELKLNIEVVNIKNPDLNAIILAEQIAI 126
Query: 369 KLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDGLM-IHSGDPCN 542
KL R A +R M+SGA+G + VSG+L G A+S + +G M +H+
Sbjct: 127 KLENRAPFRVAQKFAIRNAMKSGAKGIKTQVSGRLNGVDMARSEGYSEGEMKLHTLRQDV 186
Query: 543 DYVNTATRHVLLRQGVLGIKV 605
D+ R G +G+KV
Sbjct: 187 DFAMATAR---TTYGAIGVKV 204
>UniRef50_A6EHQ8 Cluster: 30S ribosomal protein S3; n=1; Pedobacter
sp. BAL39|Rep: 30S ribosomal protein S3 - Pedobacter sp.
BAL39
Length = 281
Score = 55.2 bits (127), Expect = 2e-06
Identities = 44/182 (24%), Positives = 91/182 (50%), Gaps = 3/182 (1%)
Frame = +3
Query: 75 NLFGDGVFKAE-LNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 251
N + D + + E + ++L+ +A+ G + V + T R + I R V+G+ G+ + +
Sbjct: 26 NNYADKLVEDEKIRKYLSARIAKGGVAKVVIERTLKRITVTIHTARPGIVIGKAGQEVDK 85
Query: 252 LTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIME 431
+ ++K + ++ +++ ++ L A AE + +L ++ RRA + M
Sbjct: 86 IKEELKK---LTKKEIQINIFEIKRPELDAQLVAEGVAKQLEARISFRRAMKSTIAATMR 142
Query: 432 SGARGCEVVVSGKLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 605
GA G +++ SG+L G + A+S ++ +G + +H+ DY A L G +G+KV
Sbjct: 143 MGAEGIKIMTSGRLGGAEMARSEQYKEGRIPLHTFRADIDY---ALAEALTTYGKIGVKV 199
Query: 606 KI 611
I
Sbjct: 200 WI 201
>UniRef50_Q12GW5 Cluster: 30S ribosomal protein S3; n=197;
Bacteria|Rep: 30S ribosomal protein S3 - Polaromonas sp.
(strain JS666 / ATCC BAA-500)
Length = 301
Score = 54.0 bits (124), Expect = 4e-06
Identities = 56/219 (25%), Positives = 94/219 (42%), Gaps = 3/219 (1%)
Frame = +3
Query: 105 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 284
++ E+L +L S V + + I I + R V+G+KG I L + ++ +
Sbjct: 38 KVREYLKAKLKNAAVSRVLIERPAKNARITIFSARPGVVIGKKGEDIENLKKELSRQLGV 97
Query: 285 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 464
P V + E+V + A A+S+ +L + RRA ++ M GA G +++ S
Sbjct: 98 P---VAVNIEEVRKPEIDAKLIADSITQQLEKRIMFRRAMKRAMQNAMRLGALGIKIMSS 154
Query: 465 GKLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGK 638
G+L G + A+ + +G + +H+ DY T GV+G+KV W +G
Sbjct: 155 GRLNGIEIARCEWYREGRVPLHTLRADIDY---GTSEAKTTYGVIGVKV-----WVYKGD 206
Query: 639 NGPXKPQPDHILVTEPKDEP-VPLEPTXEVRSLAPAPLP 752
P L P DE P P + R + P P
Sbjct: 207 TLGRGESPGAKLDAAPSDEERKPRGPRRDARPGSDRPAP 245
>UniRef50_A5B260 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 414
Score = 53.2 bits (122), Expect = 7e-06
Identities = 25/47 (53%), Positives = 36/47 (76%)
Frame = +3
Query: 129 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQ 269
++ EDGYS ++V+VT + EIII AT+TQ+ L E GR++RELT V +
Sbjct: 238 DIPEDGYSDIKVKVTGMCMEIIIRATQTQNALIENGRKMRELTLVTR 284
>UniRef50_A6R2L3 Cluster: Predicted protein; n=1; Ajellomyces
capsulatus NAm1|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 151
Score = 52.0 bits (119), Expect = 2e-05
Identities = 25/35 (71%), Positives = 28/35 (80%)
Frame = +3
Query: 90 GVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEII 194
GVF A LN F RELAE+GYSGVEVRVTP ++II
Sbjct: 95 GVFYAGLNGFFLRELAEEGYSGVEVRVTPTGTDII 129
>UniRef50_Q8KAH8 Cluster: 30S ribosomal protein S3; n=10;
Chlorobiaceae|Rep: 30S ribosomal protein S3 - Chlorobium
tepidum
Length = 253
Score = 50.4 bits (115), Expect = 5e-05
Identities = 47/181 (25%), Positives = 90/181 (49%), Gaps = 2/181 (1%)
Frame = +3
Query: 69 SENLFGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 248
+E + D V + ++ L +E A G + + + T +I I A R +++G KG I
Sbjct: 30 AEKIKQDQVIRNYVHARLKKEKA--GIAKIVIERTTKHIKINIYAARPGAIVGHKGEEIN 87
Query: 249 ELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 428
L+ Q+ I + V++ +V + A E++ Y+L ++ RRA ++ M
Sbjct: 88 NLS---QELTRITGKEVKIDVIEVIKPEIEAQLIGENIAYQLENRVSFRRAMKMAIQQAM 144
Query: 429 ESGARGCEVVVSGKLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIK 602
+GA G + +G+L G + A++ ++ +G + +H+ DY + T H + G +GIK
Sbjct: 145 RAGAEGVRIRCAGRLGGAEIARAEQYKEGKIPLHTLRANVDYA-SVTAHTI--AGAIGIK 201
Query: 603 V 605
V
Sbjct: 202 V 202
>UniRef50_A1KB21 Cluster: 30S ribosomal protein S3; n=67; cellular
organisms|Rep: 30S ribosomal protein S3 - Azoarcus sp.
(strain BH72)
Length = 260
Score = 50.0 bits (114), Expect = 6e-05
Identities = 47/190 (24%), Positives = 89/190 (46%), Gaps = 3/190 (1%)
Frame = +3
Query: 105 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 284
++ ++L + LA V + + + + + R V+G+KG I L +QK +
Sbjct: 38 KVRDYLKKRLAHASVGRVVIERPAKNARVTLFSARPGVVIGKKGEDIEALKRDLQKIVGV 97
Query: 285 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 464
P V + E+V + A A+S+ +L + RRA ++ M GA+G +++ S
Sbjct: 98 P---VHVNIEEVRKPEIDAKLIADSIAQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSS 154
Query: 465 GKLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGK 638
G+L G + A++ + +G + +H+ DY GV+GIKV + + G+
Sbjct: 155 GRLNGAEIARTEWYREGRVPLHTLRANIDY---GVSEAQTTYGVIGIKVWV-FKGEMLGR 210
Query: 639 N-GPXKPQPD 665
N P +P+
Sbjct: 211 NEQPVVAEPE 220
>UniRef50_O83225 Cluster: 30S ribosomal protein S3; n=1; Treponema
pallidum|Rep: 30S ribosomal protein S3 - Treponema
pallidum
Length = 247
Score = 49.6 bits (113), Expect = 8e-05
Identities = 41/152 (26%), Positives = 77/152 (50%), Gaps = 2/152 (1%)
Frame = +3
Query: 156 VEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGL 335
VE+ P R +++ R V+G KG I ++ + VQKR N + V++ +++ L
Sbjct: 57 VEIVRHPQRVTVVMHTARPGVVIGAKGVNIEKIGAEVQKRLN---KKVQIKVKEIKRMEL 113
Query: 336 CAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDG 512
A A+++ +L ++ R+ M+SGA+G ++ VSG+L G + +++ + +G
Sbjct: 114 NAYLVAQNVARQLTARVSFRKCLRQACAGTMKSGAQGVKIRVSGRLGGAEMSRTEEIKEG 173
Query: 513 -LMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 605
+H+ DY A H G +G+KV
Sbjct: 174 RTPLHTLRADIDY-GFAEAHT--TYGSIGVKV 202
>UniRef50_Q7UN14 Cluster: 30S ribosomal protein S3; n=3;
Planctomycetaceae|Rep: 30S ribosomal protein S3 -
Rhodopirellula baltica
Length = 236
Score = 48.4 bits (110), Expect = 2e-04
Identities = 47/186 (25%), Positives = 89/186 (47%), Gaps = 6/186 (3%)
Frame = +3
Query: 105 ELNEFLTRELAEDGY--SGVE-VRVTPIRSEIIIM--ATRTQSVLGEKGRRIRELTSVVQ 269
++ EF+T+ + Y +G++ + + R E+ +M R ++G+KG+ I L + +Q
Sbjct: 38 KIREFITKHPKKSQYKSAGIDRIEIERTRDEVRVMLYVARPGLIIGKKGQEIEILQAELQ 97
Query: 270 KRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGC 449
N+ + + L E+V L A AE + +L + RR +L M++GA+G
Sbjct: 98 ---NLVGRRINLKVEEVGRPELQAQLVAEDISQQLAKRSSFRRTMKRMLEQTMDAGAKGI 154
Query: 450 EVVVSGKLRG-QRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWD 626
++ ++G+L G + A+ K G + S ++ + QG +GI+V W
Sbjct: 155 KIQMAGRLGGAEMARREKQSAGSIPLS--TLQAKIDYGFTEAMTPQGHIGIQV-----WI 207
Query: 627 QQGKNG 644
QG G
Sbjct: 208 NQGTYG 213
>UniRef50_P46772 Cluster: 30S ribosomal protein S3; n=5;
Thermotogaceae|Rep: 30S ribosomal protein S3 -
Thermotoga maritima
Length = 209
Score = 48.0 bits (109), Expect = 2e-04
Identities = 47/172 (27%), Positives = 81/172 (47%), Gaps = 3/172 (1%)
Frame = +3
Query: 105 ELNEFLTRELAEDGYSGVEV-RVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFN 281
E+ + + + G S + V R R I + R ++G KG I L ++++FN
Sbjct: 37 EIRKIIKNKYYHAGISEIYVERPDAERINITVKTARPGIIIGRKGSEITSLREELERKFN 96
Query: 282 IPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVV 461
+ V + E++ T L A AES+ ++ + + A + M GA+G +V+V
Sbjct: 97 ---RRVVINIEEIKTPELDAQLVAESIASRIEKRASYKVAMKRAIMNAMRKGAQGIKVMV 153
Query: 462 SGKLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 611
+G+L G + A+ ++ G L + DY TAT + G +GIKV I
Sbjct: 154 AGRLGGAEIARREWYLRGRLPLQKIKAIIDY-GTAT--AWTKYGTIGIKVWI 202
>UniRef50_A6NXD5 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 283
Score = 45.6 bits (103), Expect = 0.001
Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 1/160 (0%)
Frame = +3
Query: 36 LQSWP*TIFQRSENLFGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQ 215
++ W + R+E + V ++ +FL + G +E+ + I + R
Sbjct: 15 IKDWDSRWYARNEKVGDLLVEDKKIRDFLKKTQYGAGIPKIEIERDNAKVRIYLHCARPG 74
Query: 216 SVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVR 395
V+G+ G I L ++K +SV L +V + A AE++ +L + R
Sbjct: 75 VVIGKGGEAIEALRLQLEKMLG---KSVALNIVEVKNPDMDAQLIAENIAQQLEKRIGFR 131
Query: 396 RACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDG 512
RA + M GARG + VSG+L G + A++ + DG
Sbjct: 132 RAMKNAMGRAMRMGARGIKTQVSGRLGGAEIARTEHYHDG 171
>UniRef50_UPI00015BD7E8 Cluster: UPI00015BD7E8 related cluster; n=1;
unknown|Rep: UPI00015BD7E8 UniRef100 entry - unknown
Length = 231
Score = 45.2 bits (102), Expect = 0.002
Identities = 40/170 (23%), Positives = 85/170 (50%), Gaps = 2/170 (1%)
Frame = +3
Query: 108 LNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIP 287
+ +++ G S V + + + + I++++ ++G KG + +L + +++ +
Sbjct: 39 IRKYIKERYKSAGISKVTIERSGEKIRVRILSSKPGIIIGRKGAEVDQLKNDLERI--VK 96
Query: 288 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSG 467
+ + L ++V L A AE + ++ ++ RRA + ++SGA+G +V V G
Sbjct: 97 NKDISLSVDEVRVPQLDAQLVAEDIALQIERRVSHRRAMKRAIDNAIKSGAKGIKVQVKG 156
Query: 468 KLRG-QRAKSMKFVDGLM-IHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 611
++ G A++ F+ G M + + DY AT + + G+LGIKV I
Sbjct: 157 RIGGADLARAEWFLVGRMPLQTLRADIDY-GYATAYT--KYGILGIKVWI 203
>UniRef50_Q6A6N2 Cluster: 30S ribosomal protein S3; n=27;
Bacteria|Rep: 30S ribosomal protein S3 -
Propionibacterium acnes
Length = 269
Score = 44.4 bits (100), Expect = 0.003
Identities = 42/171 (24%), Positives = 77/171 (45%), Gaps = 2/171 (1%)
Frame = +3
Query: 105 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 284
++ E+L + L G S +E+ R I + A R V+G G + ++K +
Sbjct: 37 KIREWLHKNLERAGLSSIEIERRSERVTIFLYAARPGIVIGRNGAEAERVRGELEK---L 93
Query: 285 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 464
+ ++L +V + A A+ + +L +A RRA + M +GA G + S
Sbjct: 94 TGKQIQLNILEVKSPETDAQLVAQGIAEQLAARVAFRRAMRKAQQSAMNAGALGIRIKCS 153
Query: 465 GKLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 611
G+L G + ++S + +G + +H+ DY R G +G+KV I
Sbjct: 154 GRLGGAEMSRSEGYREGRVPLHTLRADIDYGFFEARTTF---GRIGVKVWI 201
>UniRef50_P0A4C3 Cluster: 30S ribosomal protein S3; n=39;
Bacteria|Rep: 30S ribosomal protein S3 - Streptococcus
pneumoniae
Length = 217
Score = 44.0 bits (99), Expect = 0.004
Identities = 41/170 (24%), Positives = 79/170 (46%), Gaps = 2/170 (1%)
Frame = +3
Query: 108 LNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIP 287
+ +F+ +ELA+ S +E+ + + + + V+G+ G + L + + K +
Sbjct: 38 IRKFVQKELADAAVSTIEIERAVNKVNVSLHTAKPGMVIGKGGANVDALRAKLNK---LT 94
Query: 288 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSG 467
+ V + ++ L A E + +L +A RRA ++ M +GA+G + VSG
Sbjct: 95 GKQVHINIIEIKQPDLDAHLVGEGIARQLEQRVAFRRAQKQAIQRAMRAGAKGIKTQVSG 154
Query: 468 KLRG-QRAKSMKFVDGLM-IHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 611
+L G A++ + +G + +H+ DY A G LG+KV I
Sbjct: 155 RLNGADIARAEGYSEGTVPLHTLRADIDY---AWEEADTTYGKLGVKVWI 201
>UniRef50_P56798 Cluster: Chloroplast 30S ribosomal protein S3;
n=78; Streptophyta|Rep: Chloroplast 30S ribosomal
protein S3 - Arabidopsis thaliana (Mouse-ear cress)
Length = 218
Score = 43.6 bits (98), Expect = 0.005
Identities = 34/161 (21%), Positives = 79/161 (49%), Gaps = 2/161 (1%)
Frame = +3
Query: 141 DGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKV 320
+G + +E++ +III + ++ +K RR+ EL VQK N + + + ++
Sbjct: 58 EGIARIEIQKRIDLIQIIIYMGFPKLLIEDKPRRVEELQMNVQKELNCVNRKLNIAITRI 117
Query: 321 ATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMK 500
+ AE + +L ++ R+A + ++ +G +V ++G++ G+ ++
Sbjct: 118 SNPYGDPNILAEFIAGQLKNRVSFRKAMKKAIELTEQANTKGIQVQIAGRIDGKEIARVE 177
Query: 501 FV-DG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIML 617
++ +G + + + + DY + R + GVLGIK+ I +
Sbjct: 178 WIREGRVPLQTIEAKIDYCSYTVRTI---YGVLGIKIWIFV 215
>UniRef50_P46247 Cluster: 30S ribosomal protein S3; n=3;
Entomoplasmatales|Rep: 30S ribosomal protein S3 -
Mesoplasma florum (Acholeplasma florum)
Length = 241
Score = 43.2 bits (97), Expect = 0.007
Identities = 30/137 (21%), Positives = 64/137 (46%), Gaps = 1/137 (0%)
Frame = +3
Query: 105 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 284
++ E + + L + S +++ T +II R VLG++G+ + + + VQK
Sbjct: 38 KIREGVLKLLKDAAVSKIKIERTNSNITLIIRTARPAIVLGQEGKNVSNIATAVQKIAKD 97
Query: 285 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 464
VE+ +V A A + ++ + R +R +++G +G + VS
Sbjct: 98 RNLKVEVKVIEVKNPDADATLVARWIGEQITNRASFRTVQKLAIRKALKAGVKGIKTSVS 157
Query: 465 GKLRG-QRAKSMKFVDG 512
G+L G + A++ +++G
Sbjct: 158 GRLGGVEMARTEGYIEG 174
>UniRef50_Q3ZZL8 Cluster: 30S ribosomal protein S3; n=18;
Bacteria|Rep: 30S ribosomal protein S3 - Dehalococcoides
sp. (strain CBDB1)
Length = 278
Score = 43.2 bits (97), Expect = 0.007
Identities = 50/220 (22%), Positives = 98/220 (44%), Gaps = 6/220 (2%)
Frame = +3
Query: 105 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 284
+L + ++++ + S V++ + + + R V+G G+R+ E+ ++ ++
Sbjct: 38 KLRKAISKKYVDAAISQVDIERQSNKVTVSVRTARPGIVIGRGGQRVDEMRHFLE---DL 94
Query: 285 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 464
+ V+L +++ L A A S+ ++ +A RRA + M++GA+G ++ S
Sbjct: 95 IGKKVQLNIVEISQAELDAFLVARSVAEQIERRVAYRRAMKQAIFRSMQAGAKGIKICAS 154
Query: 465 GKLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGK 638
G+L G + A+ +G + +H+ DY T L G +GIKV W +G
Sbjct: 155 GRLGGVEIARREVMHEGRVPLHTLRADIDYGCTRAHTAL---GDVGIKV-----WVYRGD 206
Query: 639 NGPXKPQPDHILVTE----PKDEPVPLEPTXEVRSLAPAP 746
P + VTE D P + +V +A P
Sbjct: 207 ILPEAKEKSESEVTEMAAVMADAPAAVVTETKVADIAAKP 246
>UniRef50_Q2JFH0 Cluster: 30S ribosomal protein S3; n=94;
Bacteria|Rep: 30S ribosomal protein S3 - Frankia sp.
(strain CcI3)
Length = 315
Score = 42.7 bits (96), Expect = 0.009
Identities = 31/133 (23%), Positives = 61/133 (45%)
Frame = +3
Query: 105 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 284
++ + ++R + G S V++ T R + I R V+G +G + ++K +
Sbjct: 37 KIRKMMSRGMERAGISRVDIERTQGRLRVDIHTARPGIVIGRRGAEADRIRGDLEK---L 93
Query: 285 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 464
+ V+L +V + A A+ + +L ++ RRA ++ M+ GA+G V S
Sbjct: 94 TGKQVQLNILEVKNPEVDAQLVAQGVAEQLSSRVSFRRAMRKAMQTAMKGGAKGIRVQCS 153
Query: 465 GKLRGQRAKSMKF 503
G+L G +F
Sbjct: 154 GRLGGAEMSRSEF 166
>UniRef50_Q9PQQ4 Cluster: 30S ribosomal protein S3; n=1; Ureaplasma
parvum|Rep: 30S ribosomal protein S3 - Ureaplasma parvum
(Ureaplasma urealyticum biotype 1)
Length = 257
Score = 42.3 bits (95), Expect = 0.012
Identities = 38/171 (22%), Positives = 80/171 (46%), Gaps = 2/171 (1%)
Frame = +3
Query: 105 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 284
++ ++L+ + G VE+ R + + A ++ ++G + + + + K
Sbjct: 39 KIRKYLSTKYKNAGIDHVEIERDQQRVNVYVYAVQSGLLIGTEASEKKLIELAINKIVG- 97
Query: 285 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 464
+Q V L +V L A A + + ++ R A V++ ++++GARG + VS
Sbjct: 98 RKQLVSLKVVEVQIPELQASLMAREIADAIENRVSFRIAQKMVIKKVLKAGARGIKTHVS 157
Query: 465 GKLRG-QRAKSMKFVDGLM-IHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 611
G+L G + A+ + G+M +H+ DY + + G++G+KV I
Sbjct: 158 GRLGGVEMAREEGYTQGVMTLHTLRADIDY---SMQEAHTTYGIIGVKVWI 205
>UniRef50_Q04G79 Cluster: 30S ribosomal protein S3; n=1; Oenococcus
oeni PSU-1|Rep: 30S ribosomal protein S3 - Oenococcus
oeni (strain BAA-331 / PSU-1)
Length = 267
Score = 42.3 bits (95), Expect = 0.012
Identities = 40/174 (22%), Positives = 75/174 (43%), Gaps = 6/174 (3%)
Frame = +3
Query: 108 LNEFLTRELAEDGYSGVEV-RVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQK---R 275
+ ++L L + + + R P R + I + V+G G + L S + K
Sbjct: 39 IRKYLETNLKDAAVDRITIERTEPTRINLTIHTAKPGIVIGRGGADVERLRSELSKIVDT 98
Query: 276 FNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEV 455
+ + V + ++ L A + + L +A RRA G ++ + +GA+G
Sbjct: 99 YKGQHKRVNINIVEIRKPDLNAHLVGQQIAADLERRVAFRRAMRGAIQRVQRAGAKGVRT 158
Query: 456 VVSGKLRG-QRAKSMKFVDGLM-IHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 611
+VSG+L G A+ ++ +G + +H+ DY + + G LGIK I
Sbjct: 159 MVSGRLNGADIARKEQYTEGTVPLHTLRADIDY---SWDEAMTSYGNLGIKTWI 209
>UniRef50_Q2GED3 Cluster: 30S ribosomal protein S3; n=1;
Neorickettsia sennetsu str. Miyayama|Rep: 30S ribosomal
protein S3 - Neorickettsia sennetsu (strain Miyayama)
Length = 211
Score = 41.1 bits (92), Expect = 0.029
Identities = 42/172 (24%), Positives = 80/172 (46%), Gaps = 4/172 (2%)
Frame = +3
Query: 108 LNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFN-I 284
+ +++ A G S V ++ +I + + ++G+KG + + K+F +
Sbjct: 39 VTKYVESSFAHIGISKVIIKRKGASCDITLHCMKPGLIIGKKGADLESFRLKLNKKFGFV 98
Query: 285 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM-ESGARGCEVVV 461
P +V +V A+ A+S+ ++L + RR + +M ES +G +V
Sbjct: 99 PSLNV----VEVKKPNSSAVLVAKSIAFQLEKRSSFRRVIKKAIATVMRESDVKGVKVAC 154
Query: 462 SGKLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 611
SG+L G + A++ F +G + +H+ DY A H GV+G+KV I
Sbjct: 155 SGRLSGAEIARTEVFKEGSIPLHTMRADIDYW-VAEAHT--TYGVIGVKVWI 203
>UniRef50_Q20F10 Cluster: Chloroplast 30S ribosomal protein S3; n=2;
Chlorophyta|Rep: Chloroplast 30S ribosomal protein S3 -
Oltmannsiellopsis viridis (Marine flagellate)
Length = 235
Score = 39.1 bits (87), Expect = 0.12
Identities = 48/190 (25%), Positives = 79/190 (41%), Gaps = 11/190 (5%)
Frame = +3
Query: 69 SENLFGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR--- 239
S+ + D + ELN+ D + ++ +V + E+ I TR ++G K +
Sbjct: 30 SQLVLEDHFLREELNKRFPNSGIIDLF--IQRKVDRTQVEVEIRTTRPGLLVGRKRQNCD 87
Query: 240 RIRELTSVVQKRFN--------IPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVR 395
++++L +Q N P V L V + AI AE L +L +A R
Sbjct: 88 KLKQLRDELQVELNKFRAKNGVSPTAKVALQVTTVQNKSSEAIVIAEFLVNQLERRIAFR 147
Query: 396 RACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVL 575
RA VL I +G ++ VSG+L G +++ + D V+ R
Sbjct: 148 RALRRVLSIIQRDRVQGAKIQVSGRLNGAEIARSEWIRTGRVPLQTLRAD-VDYCHREAK 206
Query: 576 LRQGVLGIKV 605
G+LGIKV
Sbjct: 207 TIYGILGIKV 216
>UniRef50_Q9XD30 Cluster: 30S ribosomal protein S3; n=4;
Leptospira|Rep: 30S ribosomal protein S3 - Leptospira
interrogans
Length = 225
Score = 38.7 bits (86), Expect = 0.15
Identities = 27/125 (21%), Positives = 53/125 (42%)
Frame = +3
Query: 105 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 284
++ +F+ G V + P + + + + V+G+KG I + +++ +
Sbjct: 37 KIRKFVQNRFNNAGVVKVVIERFPEKINVNLHTAKPGIVIGQKGANIEAVKKILKTMTDK 96
Query: 285 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 464
P + +K T C AES+ ++ RR LR M G G ++++S
Sbjct: 97 PVNLNIIEVKKPETVAQCI---AESIALQIEQRQPFRRVMKQELRRAMRGGVEGIKILIS 153
Query: 465 GKLRG 479
G+L G
Sbjct: 154 GRLNG 158
>UniRef50_Q11HQ8 Cluster: 30S ribosomal protein S3; n=167; cellular
organisms|Rep: 30S ribosomal protein S3 - Mesorhizobium
sp. (strain BNC1)
Length = 235
Score = 38.3 bits (85), Expect = 0.20
Identities = 40/169 (23%), Positives = 74/169 (43%), Gaps = 2/169 (1%)
Frame = +3
Query: 105 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 284
++ ++ EL + S V + + + I + R ++G+KG I +L + + N
Sbjct: 38 KIRTYIENELKQAAISKVVIERPHKKCRVTIHSARPGLIIGKKGADIEKLRRKITQMTNA 97
Query: 285 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 464
L +V + A A+S+ +L +A RRA ++ M GA G + +
Sbjct: 98 ---ETHLNIVEVRKPEIDARLIAQSIAQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCT 154
Query: 465 GKLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 605
G+L G + A+ + +G + +H+ DY T GV G+KV
Sbjct: 155 GRLGGAEIARIEWYREGRVPLHTLRADIDY---GTAEAKTAYGVCGVKV 200
>UniRef50_A6XRQ3 Cluster: Putative uncharacterized protein; n=1;
Vibrio cholerae AM-19226|Rep: Putative uncharacterized
protein - Vibrio cholerae AM-19226
Length = 175
Score = 37.9 bits (84), Expect = 0.27
Identities = 34/127 (26%), Positives = 53/127 (41%)
Frame = +3
Query: 18 SFSRLPLQSWP*TIFQRSENLFGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIII 197
SFS+ P W T++ RS N D + + + N FL A DG + E P +I
Sbjct: 18 SFSQYPASEWDATLYLRSANHAADIIAQKQENSFL---FAADGMTTAE--WLPGEYTAVI 72
Query: 198 MATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLI 377
T+ Q V R+ L +VQ + P E + + L A A+ L+
Sbjct: 73 RVTKGQDVYQPYSERVTVLPDLVQLDTHDPRSDAEKALQAIRNT-LANRATADQLKLS-F 130
Query: 378 GGLAVRR 398
GG ++ +
Sbjct: 131 GGRSLEK 137
>UniRef50_A0MNG0 Cluster: Putative uncharacterized protein; n=1;
Thermus phage phiYS40|Rep: Putative uncharacterized
protein - Thermus phage phiYS40
Length = 1014
Score = 37.5 bits (83), Expect = 0.35
Identities = 25/88 (28%), Positives = 45/88 (51%)
Frame = +3
Query: 66 RSENLFGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRI 245
R++ + +FK+E FL+R L+E Y+ ++ RS I R L +K +
Sbjct: 219 RNQLSISERIFKSEREIFLSRTLSEF-YNESLNAISIARSNFIAQLNRVNESL-QKAQSP 276
Query: 246 RELTSVVQKRFNIPEQSVELYAEKVATR 329
E+ + ++RFN + +LYAE++ R
Sbjct: 277 EEVARLQEERFNYLKSLTQLYAEELKIR 304
>UniRef50_A7R9B1 Cluster: Chromosome undetermined scaffold_3592,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome undetermined scaffold_3592, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 207
Score = 36.3 bits (80), Expect = 0.81
Identities = 32/146 (21%), Positives = 69/146 (47%), Gaps = 2/146 (1%)
Frame = +3
Query: 186 EIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLR 365
++II + ++ K RRI EL VQK N + + + ++ AE +
Sbjct: 62 QVIIYMGFPKLLVEGKPRRIEELQMNVQKELNYVNRKLNIAITRITKPYGHPNILAEFIA 121
Query: 366 YKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFV-DG-LMIHSGDPC 539
+L ++ R+A + ++ +G +V ++G++ G+ ++++ +G + + +
Sbjct: 122 GQLRNRVSFRKAIKKAIELTEQADTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAK 181
Query: 540 NDYVNTATRHVLLRQGVLGIKVKIML 617
DY + R + GVLGIK+ I +
Sbjct: 182 IDYCSYRVRTI---YGVLGIKIWIFV 204
>UniRef50_A5AUQ8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 617
Score = 36.3 bits (80), Expect = 0.81
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Frame = +3
Query: 192 IIMATRTQSVLGEK-GRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRY 368
+I TRT S+ + ++IREL SV Q +I + + A A RGL A+ ES+R
Sbjct: 101 VIRQTRTLSMTSAQFPKKIRELQSVTQSYVSIDATTKDKAAALAAARGLGRNAKIESVRL 160
Query: 369 KLIGGLAVRRACYGVLRFIMESGARG 446
++ L + +C G+ M + + G
Sbjct: 161 PMLTVLKL-HSCEGITSASMAAISHG 185
>UniRef50_Q6YR15 Cluster: 30S ribosomal protein S3; n=163;
Firmicutes|Rep: 30S ribosomal protein S3 - Onion yellows
phytoplasma
Length = 252
Score = 36.3 bits (80), Expect = 0.81
Identities = 37/146 (25%), Positives = 69/146 (47%), Gaps = 2/146 (1%)
Frame = +3
Query: 180 RSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAES 359
R I + + ++G+ G +L V K + ++ V L +V A+ A++
Sbjct: 67 RITISVHTAKPGVIIGKDGDTRNKL---VAKLKELTQKDVNLNVLEVKNSDKIALLIAQN 123
Query: 360 LRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDG-LMIHSGD 533
+ +L + RR ++ +++GA+G + ++SG+L G + A+S +G + +H+
Sbjct: 124 MAEQLENRMFFRRVQKMAIQKALKAGAKGVKTLISGRLGGAEIARSEGHAEGRVPLHTLR 183
Query: 534 PCNDYVNTATRHVLLRQGVLGIKVKI 611
DY A GVLGIKV I
Sbjct: 184 ADIDY---AAVEAHTTYGVLGIKVWI 206
>UniRef50_A6GSD9 Cluster: TonB, C-terminal; n=1; Limnobacter sp.
MED105|Rep: TonB, C-terminal - Limnobacter sp. MED105
Length = 236
Score = 35.5 bits (78), Expect = 1.4
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 645 PXKPQPDHILVTEPKDEPVPLEPTXEVRSLAPAPLP 752
P KP+P + EPK P P+ VR +AP P+P
Sbjct: 81 PPKPEPKPVPKPEPKPTPKPVAKPEPVREVAPEPVP 116
>UniRef50_Q9U982 Cluster: Drosophila dodeca-satellite protein 1;
n=9; Endopterygota|Rep: Drosophila dodeca-satellite
protein 1 - Drosophila melanogaster (Fruit fly)
Length = 1301
Score = 34.7 bits (76), Expect = 2.5
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +3
Query: 171 TPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLC-AIA 347
T ++ + + +LG+ G+R+RE+ V R NIP QS E +E + G IA
Sbjct: 167 TQASRQVTVPREHFRVILGKGGQRLREIERVTATRINIPSQSDE--SEFITIAGTKEGIA 224
Query: 348 QAE 356
QAE
Sbjct: 225 QAE 227
>UniRef50_Q9XDW7 Cluster: PsbAa; n=1; Rhodopseudomonas
palustris|Rep: PsbAa - Rhodopseudomonas palustris
Length = 403
Score = 29.1 bits (62), Expect(2) = 2.9
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +3
Query: 285 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGA--RGCEVV 458
P + L KVA L I A +LR +LI G V GV+ + + A RGCEV
Sbjct: 114 PRRLAALEGTKVAVHYLRGIDDALTLRPQLIEGHRVALVGGGVIGLEVAAAALSRGCEVT 173
Query: 459 V 461
+
Sbjct: 174 I 174
Score = 24.2 bits (50), Expect(2) = 2.9
Identities = 12/55 (21%), Positives = 26/55 (47%)
Frame = +3
Query: 441 RGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 605
RG ++ +L GQ+ S+ DG ++ + + + L+ G+ G++V
Sbjct: 201 RGAAILCKAELSGQQTHSLTLADGRVVDADVIVVGIGSEPAGELALQIGLAGVQV 255
>UniRef50_UPI0000DA2268 Cluster: PREDICTED: hypothetical protein;
n=2; Rattus norvegicus|Rep: PREDICTED: hypothetical
protein - Rattus norvegicus
Length = 328
Score = 34.3 bits (75), Expect = 3.3
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 347 PGRISKIQAYRRSRCTSCLLWCSPFHH 427
PGR +A RRSRC+ C W HH
Sbjct: 240 PGRDWSAEASRRSRCSRCCTWSGDIHH 266
>UniRef50_UPI000049839C Cluster: hypothetical protein 3.t00111; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
protein 3.t00111 - Entamoeba histolytica HM-1:IMSS
Length = 303
Score = 34.3 bits (75), Expect = 3.3
Identities = 23/82 (28%), Positives = 37/82 (45%)
Frame = +3
Query: 57 IFQRSENLFGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKG 236
IF+ +EN+ DG F L E+G+ G E R R I + + EK
Sbjct: 82 IFKYNENVLKDGRFSQTYGIVLKHHSIEEGFVGDEER----REIAKIRQRKIDELYKEKE 137
Query: 237 RRIRELTSVVQKRFNIPEQSVE 302
R+I E +++R+ ++ VE
Sbjct: 138 RKIAEYVKKIEERYESDKEVVE 159
>UniRef50_Q5U794 Cluster: Signal recognition particle GTPase; n=1;
Azospirillum lipoferum|Rep: Signal recognition particle
GTPase - Azospirillum lipoferum
Length = 276
Score = 33.5 bits (73), Expect = 5.7
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 618 PWDQQGKNGPXKPQPDHILVTEPKDEPVPLEPTXEVRSLAPAPLP 752
P Q+ P +P+P+ V EP P +EP ++PAP+P
Sbjct: 25 PVSQESAPPPPEPEPEVEPVPEPAPAPPSVEPPLSPAQVSPAPVP 69
>UniRef50_Q39682 Cluster: Glycine-rich protein; n=1; Daucus
carota|Rep: Glycine-rich protein - Daucus carota
(Carrot)
Length = 111
Score = 33.1 bits (72), Expect = 7.6
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = +2
Query: 407 WCSPFHHGIWCPWL*SCCIWQAAWSTCQINEVCRW 511
W P G WC W C IW S C+ RW
Sbjct: 32 WWIPPRRGRWCWWRCRCWIWSRLRSWCRSRRRIRW 66
>UniRef50_P36021 Cluster: Monocarboxylate transporter 8; n=24;
Euteleostomi|Rep: Monocarboxylate transporter 8 - Homo
sapiens (Human)
Length = 539
Score = 33.1 bits (72), Expect = 7.6
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Frame = +3
Query: 618 PW---DQQGKNGPXKPQPDHILVTEPKDEPVPL---EPTXEVRSLA-PAPLP 752
PW DQ+ + P+P+ EP+ EPVP+ EP E + L PAPLP
Sbjct: 14 PWQEADQEQQEPVGSPEPESEPEPEPEPEPVPVPPPEPQPEPQPLPDPAPLP 65
>UniRef50_Q5SCB4 Cluster: Cyclin H; n=2; Ostreococcus|Rep: Cyclin H
- Ostreococcus tauri
Length = 322
Score = 32.7 bits (71), Expect = 10.0
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Frame = +3
Query: 375 IGGLAVRRACYGVLR----FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMI 521
+ GL R CYG R F+M+ GC+ S +L R K++ VD LM+
Sbjct: 146 LSGLKFRLVCYGATRPLDGFLMDVEDGGCKGATSKQLIECRKKALDIVDRLML 198
>UniRef50_A0DWV1 Cluster: Chromosome undetermined scaffold_67, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_67,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 331
Score = 32.7 bits (71), Expect = 10.0
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +3
Query: 591 LGIKVKIMLPWDQQGKNGPXKPQPDHILVTEPKDEPVPLEPTXEVRSLAPAPLP 752
LG++ K L K GP + QP V +P +P P++P +++ P P
Sbjct: 59 LGLQEKDFLVVMVNVKKGPPQQQPVQQQVQQPPQQPQPVQPQQPIQAFKPVVAP 112
>UniRef50_Q5XIY2 Cluster: Transmembrane protein 56; n=8;
Euteleostomi|Rep: Transmembrane protein 56 - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 264
Score = 32.7 bits (71), Expect = 10.0
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +3
Query: 402 CYGVLRFI-MESGARGCEVVVSGKLRGQRAKSMK 500
C +L I M ARGC V++GKL+G++A S K
Sbjct: 222 CLDILNIIWMYKIARGCYKVITGKLKGRKADSKK 255
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 770,201,114
Number of Sequences: 1657284
Number of extensions: 16019531
Number of successful extensions: 51762
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 48067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51493
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62146450145
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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