Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_J05
         (752 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    25   0.86 
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    25   0.86 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      24   1.5  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      24   1.5  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   4.6  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   4.6  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   4.6  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   4.6  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   8.0  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   8.0  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 427 WNLVPVVVKLLYLASC 474
           WNL+P+ V +L  A+C
Sbjct: 922 WNLLPIAVFILVCATC 937


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 427 WNLVPVVVKLLYLASC 474
           WNL+P+ V +L  A+C
Sbjct: 922 WNLLPIAVFILVCATC 937


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 425 DETENTIASTTYSETSDKLVS*RFGLG 345
           DET+N  +  TY+E  +KL      LG
Sbjct: 340 DETKNHYSKNTYNEQGNKLADLYKSLG 366


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 425 DETENTIASTTYSETSDKLVS*RFGLG 345
           DET+N  +  TY+E  +KL      LG
Sbjct: 232 DETKNHYSKNTYNEQGNKLADLYKSLG 258


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +2

Query: 8   PMLLFFSAPVAIMAVNNISKKRKFVW 85
           P  LFF +P  +   + IS +  ++W
Sbjct: 442 PPYLFFESPPVVFLNDFISHQHAWIW 467


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +2

Query: 8   PMLLFFSAPVAIMAVNNISKKRKFVW 85
           P  LFF +P  +   + IS +  ++W
Sbjct: 442 PPYLFFESPPVVFLNDFISHQHAWIW 467


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +2

Query: 8   PMLLFFSAPVAIMAVNNISKKRKFVW 85
           P  LFF +P  +   + IS +  ++W
Sbjct: 442 PPYLFFESPPVVFLNDFISHQHAWIW 467


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +2

Query: 8   PMLLFFSAPVAIMAVNNISKKRKFVW 85
           P  LFF +P  +   + IS +  ++W
Sbjct: 442 PPYLFFESPPVVFLNDFISHQHAWIW 467


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = -3

Query: 459 QQLHNH--GHQIP**NGEHHSKHDVQRDL 379
           Q ++NH  GH +   + +HH  H  Q+ +
Sbjct: 160 QSMNNHHMGHHMQEQHPQHHQPHHQQQHM 188


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = -3

Query: 459 QQLHNH--GHQIP**NGEHHSKHDVQRDL 379
           Q ++NH  GH +   + +HH  H  Q+ +
Sbjct: 162 QSMNNHHMGHHMQEQHPQHHQPHHQQQHM 190


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,562
Number of Sequences: 336
Number of extensions: 3955
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20131186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)