Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P02_F_J05
(752 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1220 - 24966169-24966327,24966421-24966552,24966639-249666... 339 1e-93
08_01_0892 - 8778097-8778236,8778390-8778486,8778568-8778747,877... 32 0.43
08_02_0840 + 21715077-21716962,21717541-21717814,21718265-21718579 30 2.3
05_07_0009 - 27015346-27015705,27016552-27016676,27016778-270168... 29 3.0
05_04_0322 + 20239793-20240127,20240176-20240728,20241317-202414... 29 3.0
09_04_0180 + 15367737-15367755,15368874-15369739 29 4.0
07_01_0214 + 1595917-1596526,1597127-1597140,1598414-1598743,159... 29 4.0
03_05_0400 - 23815408-23815589,23815706-23816020,23816203-238162... 29 4.0
08_02_0478 + 17621678-17623768 28 6.9
04_03_0904 + 20717005-20718087 28 6.9
01_07_0132 - 41298184-41298558,41298648-41298729,41298850-412989... 28 6.9
08_01_1011 + 10226160-10226676,10226794-10226810,10227677-102278... 28 9.2
08_01_0346 - 3063440-3064189 28 9.2
05_04_0096 - 17931061-17931435,17931539-17931620,17932319-179324... 28 9.2
04_03_0350 + 14755619-14755692,14755697-14755883,14755964-147560... 28 9.2
02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-98... 28 9.2
>07_03_1220 -
24966169-24966327,24966421-24966552,24966639-24966693,
24967496-24967667,24967771-24967918,24968015-24968050
Length = 233
Score = 339 bits (834), Expect = 1e-93
Identities = 165/214 (77%), Positives = 179/214 (83%)
Frame = +3
Query: 54 TIFQRSENLFGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEK 233
T + DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEK
Sbjct: 5 TQISKKRKFVADGVFFAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEK 64
Query: 234 GRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGV 413
GRRIRELTSVVQKRFN PE VELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGV
Sbjct: 65 GRRIRELTSVVQKRFNFPENGVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 124
Query: 414 LRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVL 593
LRF+MESGA+GCEV+VSGKLR QRAKSMKF DG MI SG P N Y+++A RHVLLRQGVL
Sbjct: 125 LRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGYPVNLYIDSAVRHVLLRQGVL 184
Query: 594 GIKVKIMLPWDQQGKNGPXKPQPDHILVTEPKDE 695
GIKVKIML WD +GK GP P PD + + PKDE
Sbjct: 185 GIKVKIMLDWDPKGKQGPMTPLPDLVTIHAPKDE 218
>08_01_0892 -
8778097-8778236,8778390-8778486,8778568-8778747,
8779138-8779247,8781153-8781294,8782298-8782686,
8782752-8782834,8783524-8785244,8785894-8786040,
8786121-8786264,8786669-8786741,8787413-8787633
Length = 1148
Score = 32.3 bits (70), Expect = 0.43
Identities = 17/76 (22%), Positives = 37/76 (48%)
Frame = -1
Query: 590 YSLSEKHMSGSSVDVIITRVSRVDHESIYKLH*FGTLTTQLARYNNFTTTGTRFHDETEN 411
+ L++ + GS +++ T V R D +++Y+ G ++ +NN +++G HD N
Sbjct: 739 FKLNQVCIDGSRDELLETDVIRQDIKALYQSIDMGLVSEATVCFNNVSSSGLSVHDTGGN 798
Query: 410 TIASTTYSETSDKLVS 363
I ++ +S
Sbjct: 799 VIGQGDQDSEKNRYLS 814
>08_02_0840 + 21715077-21716962,21717541-21717814,21718265-21718579
Length = 824
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
Frame = -3
Query: 543 HYKGLQSGS*VHL-QTSLIWHVDHA-----ACQIQQLHNH 442
HY GS + + +TSL+WH + A +CQ ++L +H
Sbjct: 657 HYSDATDGSYIEVKETSLVWHYEEADPDFGSCQAKELQDH 696
>05_07_0009 -
27015346-27015705,27016552-27016676,27016778-27016853,
27016923-27017105,27018000-27018077,27018159-27018239,
27018347-27018412,27018491-27018556,27019126-27019176,
27019286-27019378,27019498-27019625,27019713-27019851,
27021039-27021136,27021332-27021401,27021565-27021654
Length = 567
Score = 29.5 bits (63), Expect = 3.0
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = +3
Query: 543 DYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPXKPQPDHILVTEPKDEPVPLEPTXE 722
+YV A R V +R+ L + +++L + + + P P P +EPVP+ P E
Sbjct: 305 EYVREAPRMVPVREP-LELPERLLLTYKPEEQEEDSVPDPVEE-EKPPVEEPVPVPPVTE 362
Query: 723 VRSLAPAP 746
S P P
Sbjct: 363 AVSPPPPP 370
>05_04_0322 +
20239793-20240127,20240176-20240728,20241317-20241425,
20244456-20244723,20244943-20245197,20245594-20246539
Length = 821
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +2
Query: 317 GGYSWSLRYRPG-RISKIQAYRRSRCTSCLLWC 412
G SWS RY+ ISK Y RC C++ C
Sbjct: 665 GALSWSRRYQIAIGISKGLPYLHERCRDCIIHC 697
>09_04_0180 + 15367737-15367755,15368874-15369739
Length = 294
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +3
Query: 654 PQPDHILVTEPKDEPVPLEPTXEVRSLAPAPLP 752
P+PD L EP+ EP P EP E + P P P
Sbjct: 157 PEPDPELEPEPEPEPDP-EPEPEPPTPKPIPTP 188
>07_01_0214 +
1595917-1596526,1597127-1597140,1598414-1598743,
1598853-1598963,1599113-1599269,1603366-1603619,
1603762-1603960,1604341-1604498
Length = 610
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = -3
Query: 501 TSLIWHVDHAACQIQQLHNHGHQIP**NGEHHSKH 397
T L H AA Q H HGH G HHSKH
Sbjct: 247 TPLALHQAAAAAGPSQYHGHGHPHH-GGGHHHSKH 280
>03_05_0400 -
23815408-23815589,23815706-23816020,23816203-23816277,
23816377-23816530
Length = 241
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -3
Query: 744 ARARGSALRWSARGARARPWALSPGCGLVVAXSG 643
A + GS+ R + GARA A P CG +V +G
Sbjct: 13 AASTGSSARMAGAGARAEEAACEPPCGGLVVGAG 46
>08_02_0478 + 17621678-17623768
Length = 696
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +3
Query: 498 KFVDGLMIHSGDPCNDYVNTATRHVLLRQGVL 593
K + GL+IHSG ND+V+++ + + G++
Sbjct: 421 KQIHGLVIHSGFASNDFVSSSLIFMYSKSGII 452
>04_03_0904 + 20717005-20718087
Length = 360
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +3
Query: 651 KPQPDHILVTEPKDEPVPLEPTXEVRSLAPAPLP 752
KP P +PK P P PT S P P P
Sbjct: 151 KPTPPPTYKPQPKPTPTPYTPTPTPPSYKPQPKP 184
>01_07_0132 -
41298184-41298558,41298648-41298729,41298850-41298977,
41299059-41299157,41299279-41299434,41300709-41300783,
41301962-41302137,41303210-41303252,41303336-41303503,
41303584-41303731,41306316-41306587
Length = 573
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/75 (20%), Positives = 35/75 (46%)
Frame = +3
Query: 387 AVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATR 566
A R A G++ + + G G SG+ RGQ +++ ++G + +Y++ A
Sbjct: 472 AARLAAAGIVGILKKLGRDGSGAASSGRGRGQPRRTVVAIEGGLYQGYPVFREYLDEALV 531
Query: 567 HVLLRQGVLGIKVKI 611
+L + + +++
Sbjct: 532 EILGEEVARNVTLRV 546
>08_01_1011 +
10226160-10226676,10226794-10226810,10227677-10227886,
10227921-10228406
Length = 409
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -1
Query: 122 EELIEFRLENPISKQIFASLKYCS 51
+E+ E+ L + IS +FASLKY S
Sbjct: 290 DEIYEYFLNSEISSYLFASLKYVS 313
>08_01_0346 - 3063440-3064189
Length = 249
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +3
Query: 351 AESLRYKLIGGLAVRRACYGVLR 419
A S L+GG A ACYGVLR
Sbjct: 221 ARSAARVLLGGWAAMAACYGVLR 243
>05_04_0096 -
17931061-17931435,17931539-17931620,17932319-17932446,
17932523-17932621,17932739-17932894,17934120-17934194,
17934582-17934749,17934825-17934993,17936640-17936923
Length = 511
Score = 27.9 bits (59), Expect = 9.2
Identities = 29/177 (16%), Positives = 72/177 (40%), Gaps = 2/177 (1%)
Frame = +3
Query: 90 GVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQ 269
GV+ E+ + +++AE+ V + + ++ ++ + +RE+ +++
Sbjct: 325 GVYLGEIARLVFQKMAEES-DIFGTAVDGLSTPFVLSTPNLAAIREDDSPDLREVGKILE 383
Query: 270 KRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARG- 446
+ +P+ V L K+ R I + A R A ++ + + G G
Sbjct: 384 EHLKLPD--VPLKTRKLVARVSDIITRR-----------AARLAAAAIVAILQKIGCDGT 430
Query: 447 -CEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIM 614
C +RG R +++ ++G + +Y+N A +L + + +++M
Sbjct: 431 LCGSTQVRTMRGVRRRTVVAIEGGLFEGYSVFREYLNEALVEILGEEIAATVSLRVM 487
>04_03_0350 +
14755619-14755692,14755697-14755883,14755964-14756072,
14756157-14756379,14756716-14756794,14757222-14757273,
14757354-14757416,14757519-14757616,14757970-14758031,
14758066-14758159,14758430-14758509,14758617-14758686,
14758807-14758864,14758973-14759037,14759127-14759221,
14759318-14759402
Length = 497
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = -2
Query: 658 CGXFGPFLPCWSHGNMILTLIPSTPCLRSTCLVAVLT*SLQGSPEW 521
C F P P H ++ L+PS C T +A L G P++
Sbjct: 314 CYRFSPEFPVIIHNELMFLLLPSCSCFDYTNGLADLVVGYMGVPKY 359
>02_01_0137 +
988442-988641,989088-989281,989369-989488,989594-989673,
990244-990510,990840-992458,992571-993327,993560-995506
Length = 1727
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Frame = +3
Query: 540 NDYVNTATRHVLLR----QGVLGIKVKIMLPWDQQGKNGPXKPQPDHILVTEPK 689
++ +N H+ +R QGVL +++ + +Q +NGP K + L+TE K
Sbjct: 359 SERINGIVNHLRIRGNPVQGVLQLEILRQIALPKQSQNGPRKSRLTISLMTEHK 412
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,434,044
Number of Sequences: 37544
Number of extensions: 467393
Number of successful extensions: 1532
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1515
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -