Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_J05
         (752 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28)       378   e-105
SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9)             31   1.3  
SB_42203| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_57373| Best HMM Match : DUF292 (HMM E-Value=4.7)                    29   4.1  
SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_3270| Best HMM Match : MMPL (HMM E-Value=0.68)                      29   4.1  
SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31)       29   4.1  
SB_32197| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_31666| Best HMM Match : Exo_endo_phos (HMM E-Value=7.6e-05)         29   5.4  
SB_2854| Best HMM Match : TUDOR (HMM E-Value=0.00033)                  29   5.4  
SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42)           29   5.4  
SB_56721| Best HMM Match : DUF755 (HMM E-Value=0.52)                   28   9.4  
SB_49303| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0037)          28   9.4  
SB_29024| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  
SB_25338| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  
SB_50112| Best HMM Match : PHD (HMM E-Value=0.0011)                    28   9.4  
SB_5691| Best HMM Match : Exo_endo_phos (HMM E-Value=7.5e-05)          28   9.4  

>SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28)
          Length = 240

 Score =  378 bits (929), Expect = e-105
 Identities = 180/219 (82%), Positives = 193/219 (88%)
 Frame = +3

Query: 66  RSENLFGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRI 245
           +      DG+FKAELNEFLTRELAEDGYSGVEVRVTPIR+EIII+ATRTQ+VLGEKGRRI
Sbjct: 7   KKRKFVADGLFKAELNEFLTRELAEDGYSGVEVRVTPIRTEIIILATRTQNVLGEKGRRI 66

Query: 246 RELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFI 425
           RELTSVVQKRF  PE SVELYAEKVATRGLCAIAQ ESLRYKLIGGLAVRRACYGVLRFI
Sbjct: 67  RELTSVVQKRFGFPEGSVELYAEKVATRGLCAIAQCESLRYKLIGGLAVRRACYGVLRFI 126

Query: 426 MESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 605
           MESGA+GCEVVVSGKLRGQRAKSMKFVDGLM+H+G+P   YV+TA RHV LRQGVLGIKV
Sbjct: 127 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMVHAGEPTTHYVDTAVRHVYLRQGVLGIKV 186

Query: 606 KIMLPWDQQGKNGPXKPQPDHILVTEPKDEPVPLEPTXE 722
           KIMLPWD  GK GP KP PD + + EPKDE VP +PT E
Sbjct: 187 KIMLPWDPTGKTGPKKPLPDQVSIVEPKDEVVPAQPTSE 225


>SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9)
          Length = 482

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = +2

Query: 614 VAVGPARQERPEXATTRPHP 673
           VA GPAR   PE   TRPHP
Sbjct: 107 VAAGPARITSPEPPATRPHP 126


>SB_42203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 228

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +2

Query: 323 YSWSLRYRPGRISKIQAYRRSRCTSCLLWCSPFHHGIWCPW 445
           Y+W L + P  +  ++ Y R    +  L C+P  +  W  W
Sbjct: 4   YNWWLAWNPALLCLMRQYNRWLAWNPALLCNPRQYNRWLAW 44


>SB_57373| Best HMM Match : DUF292 (HMM E-Value=4.7)
          Length = 383

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
 Frame = +3

Query: 114 EFLTRELAEDGYSGVEVR--VTPIR----SEIIIMATRTQSVLGEKGRRIRELTSVVQKR 275
           E+L R++  D YS  E    +TP         +IMA R QSVL ++GR   +LT   Q+R
Sbjct: 175 EYLQRKI-NDAYSPEEAEKNITPYSLCSYENPMIMAFRLQSVLRKRGR--DDLT-WAQQR 230

Query: 276 FNIPEQSVELYA 311
           F+    SVE +A
Sbjct: 231 FDDLADSVEQFA 242


>SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3172

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/70 (22%), Positives = 34/70 (48%)
 Frame = +3

Query: 144  GYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVA 323
            GY+  +     + S +++ A   +++  ++ + +RE    +QKRF   E+   +Y     
Sbjct: 1941 GYTARKEYSRCVTSIVLMQALVRRNLAVKRYQALREAAIGIQKRFRAKEEGKLVYLMFHI 2000

Query: 324  TRGLCAIAQA 353
             RG C + Q+
Sbjct: 2001 QRGACIVIQS 2010


>SB_3270| Best HMM Match : MMPL (HMM E-Value=0.68)
          Length = 401

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 464 WQAAWSTCQINEVCRWTHDPLW 529
           W+ AW+ C + E   +T++P W
Sbjct: 76  WKQAWTPCSLQETTIYTNNPPW 97


>SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31)
          Length = 976

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +2

Query: 458 CIWQAAWSTCQINEVCRWTHDPLWRP 535
           C W + W   +  E   WTH P  RP
Sbjct: 185 CRWLSQWKQSEEEESVLWTHSPARRP 210


>SB_32197| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 669

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = +3

Query: 12  CSSFSRLPLQSWP*TIFQRSENLFGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIR 182
           C   S   + S   ++F+R  N FG GVF+A  ++ +  E  +      E+  T ++
Sbjct: 190 CPDISTYSIFSQNYSVFRRDRNKFGGGVFQAIKSDLVCTEEPDFEVDNCEITWTSLK 246


>SB_31666| Best HMM Match : Exo_endo_phos (HMM E-Value=7.6e-05)
          Length = 249

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = +3

Query: 12  CSSFSRLPLQSWP*TIFQRSENLFGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIR 182
           C   S   + S   ++F+R  N FG GVF+A  ++ +  E  +      E+  T ++
Sbjct: 37  CPDISTYSIFSQNYSVFRRDRNKFGGGVFQAIKSDLVCTEEPDFEVDNCEITWTSLK 93


>SB_2854| Best HMM Match : TUDOR (HMM E-Value=0.00033)
          Length = 359

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -3

Query: 735 RGSALRWSARGARARPWALSPGCGLVVAXSGRSCLAGP 622
           R  A R   RGA AR W +SPG  L  +  GR+  + P
Sbjct: 164 RAMAGRGRGRGALAR-WTISPGQPLAASFDGRAVASVP 200


>SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42)
          Length = 426

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +2

Query: 587 STRNQGQNHVAVGPARQERPEXATTRP 667
           +++N  + H  + PA+QE+PE  + +P
Sbjct: 162 TSKNTSRTHKIIAPAKQEKPERYSRKP 188


>SB_56721| Best HMM Match : DUF755 (HMM E-Value=0.52)
          Length = 516

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 678 TEPKDEPVPLEPTXEVRSLAPAPLP 752
           +EP D P P+ P  E+ +  P P P
Sbjct: 55  SEPSDSPGPMSPEPEIMTPTPEPSP 79


>SB_49303| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0037)
          Length = 722

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/51 (27%), Positives = 29/51 (56%)
 Frame = +3

Query: 30  LPLQSWP*TIFQRSENLFGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIR 182
           +P+Q++  ++F+R  N FG GVF+A  ++ +  E  +      E+  T ++
Sbjct: 398 VPVQNY--SVFRRDRNKFGGGVFQAIKSDLVCTEEPDFEVDNCEIIWTSLK 446


>SB_29024| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 998

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 290 LWNVESLLYYGSQLTDSASFLSEHTLCPGGHNNDLRADGSDPH 162
           LWN++  +        +  F + H+ C GG N D  A GS+ H
Sbjct: 186 LWNIKDRVLERKYQGVTQGFYTIHS-CFGGVNQDFLASGSEDH 227


>SB_25338| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1360

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = +3

Query: 12  CSSFSRLPLQSWP*TIFQRSENLFGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIR 182
           C   S   + S   ++F+R  N FG GVF+A  ++ +  E  +      E+  T ++
Sbjct: 214 CPDISTYSIFSQNYSVFRRDRNKFGGGVFQAIKSDLVCTEEPDFEVDNCEIIWTSLK 270


>SB_50112| Best HMM Match : PHD (HMM E-Value=0.0011)
          Length = 357

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = +3

Query: 12  CSSFSRLPLQSWP*TIFQRSENLFGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIR 182
           C   S   + S   ++F+R  N FG GVF+A  ++ +  E  +      E+  T ++
Sbjct: 267 CPDISTYSIFSQNYSVFRRDRNKFGGGVFQAIKSDLVCTEEPDFEVDNCEIIWTSLK 323


>SB_5691| Best HMM Match : Exo_endo_phos (HMM E-Value=7.5e-05)
          Length = 273

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = +3

Query: 12  CSSFSRLPLQSWP*TIFQRSENLFGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIR 182
           C   S   + S   ++F+R  N FG GVF+A  ++ +  E  +      E+  T ++
Sbjct: 37  CPDISTYSIFSQNYSVFRRDRNKFGGGVFQAIKSDLVCTEEPDFEVDNCEIVWTSLK 93


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,178,885
Number of Sequences: 59808
Number of extensions: 521061
Number of successful extensions: 1590
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1583
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)