Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_J05
         (752 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39851-9|AAF99870.1|  247|Caenorhabditis elegans Ribosomal prote...   340   6e-94
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    30   1.5  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    30   1.5  
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ...    29   2.7  
Z34802-8|CAH10787.1|  704|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z34802-7|CAA84338.2|  828|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z31590-7|CAA83463.1|  361|Caenorhabditis elegans Hypothetical pr...    29   3.5  

>U39851-9|AAF99870.1|  247|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 3 protein.
          Length = 247

 Score =  340 bits (836), Expect = 6e-94
 Identities = 159/208 (76%), Positives = 182/208 (87%)
 Frame = +3

Query: 90  GVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQ 269
           G+FKAELN FL +ELAEDGYSGVEVR TP R+E+IIMATRTQ+VLGE+GRRI+ELTSVVQ
Sbjct: 17  GIFKAELNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQNVLGERGRRIKELTSVVQ 76

Query: 270 KRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGC 449
           KRF   E SVELYAEKV+ RGLCA+AQ ESLRYKL+GGLAVRRACYGVLRFIMESGA+G 
Sbjct: 77  KRFGFEEGSVELYAEKVSNRGLCAVAQCESLRYKLVGGLAVRRACYGVLRFIMESGAQGV 136

Query: 450 EVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQ 629
           EV+VSGKLRGQRAK+MKFVDGLMIHSG P NDY+  A RHV LRQGV+GIKVKIMLP+D 
Sbjct: 137 EVIVSGKLRGQRAKAMKFVDGLMIHSGHPVNDYIQQAVRHVQLRQGVIGIKVKIMLPYDP 196

Query: 630 QGKNGPXKPQPDHILVTEPKDEPVPLEP 713
           +G+NGP    PDH+ + EP++E +P EP
Sbjct: 197 RGQNGPRNALPDHVQIVEPQEEVLPKEP 224


>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
            F57F4.4 protein.
          Length = 2090

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/23 (60%), Positives = 14/23 (60%)
 Frame = +2

Query: 551  QHCYQTCASQTRSTRNQGQNHVA 619
            Q CY  CAS T ST  Q QNH A
Sbjct: 1799 QGCYGDCASITISTTIQNQNHTA 1821


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
            interacting proteinprotein 1 protein.
          Length = 2153

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/23 (60%), Positives = 14/23 (60%)
 Frame = +2

Query: 551  QHCYQTCASQTRSTRNQGQNHVA 619
            Q CY  CAS T ST  Q QNH A
Sbjct: 1799 QGCYGDCASITISTTIQNQNHTA 1821


>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
           protein Y18D10A.1 protein.
          Length = 1634

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = +3

Query: 210 TQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATR 329
           + S+ G+KG+ +REL + + K  ++ E++  + AE  A R
Sbjct: 396 SSSIHGKKGKTVRELQTEMMKGESVKEKAARMRAEASAGR 435


>Z34802-8|CAH10787.1|  704|Caenorhabditis elegans Hypothetical
           protein M88.5b protein.
          Length = 704

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +3

Query: 132 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQ 293
           L   G  G    +  IR+E+ +       ++G+ G+ +REL  +      IPE+
Sbjct: 543 LPSSGMDGDRSHMLRIRTEVSVPTRIIGRIIGKGGQNVRELQRITGAVVKIPEE 596


>Z34802-7|CAA84338.2|  828|Caenorhabditis elegans Hypothetical
           protein M88.5a protein.
          Length = 828

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +3

Query: 132 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQ 293
           L   G  G    +  IR+E+ +       ++G+ G+ +REL  +      IPE+
Sbjct: 667 LPSSGMDGDRSHMLRIRTEVSVPTRIIGRIIGKGGQNVRELQRITGAVVKIPEE 720


>Z31590-7|CAA83463.1|  361|Caenorhabditis elegans Hypothetical
           protein R01H10.6 protein.
          Length = 361

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = -1

Query: 545 IITRVSRVDHESIYKLH*FGTLTTQLARYNNFTTTGTRFHDETENTIASTTYSETSDKL 369
           ++TR   + +E+IY L      TT+      FTTT    H +  NTI+S + +  + K+
Sbjct: 89  LVTRNRGISNEAIYVLAKVSATTTKFEFI--FTTTNPASHSKLFNTISSISRAYETTKM 145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,238,776
Number of Sequences: 27780
Number of extensions: 369523
Number of successful extensions: 1200
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1191
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)