Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_J05
         (752 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g35530.1 68418.m04226 40S ribosomal protein S3 (RPS3C)             340   7e-94
At2g31610.1 68415.m03862 40S ribosomal protein S3 (RPS3A)             335   2e-92
At3g53870.1 68416.m05951 40S ribosomal protein S3 (RPS3B) riboso...   331   3e-91
At2g25150.1 68415.m03008 transferase family protein similar to 1...    32   0.36 
At3g06190.2 68416.m00712 speckle-type POZ protein-related simila...    32   0.47 
At3g06190.1 68416.m00711 speckle-type POZ protein-related simila...    32   0.47 
At3g48010.1 68416.m05234 cyclic nucleotide-regulated ion channel...    31   0.82 
At4g30360.1 68417.m04314 cyclic nucleotide-regulated ion channel...    30   1.4  
At5g14870.1 68418.m01744 cyclic nucleotide-regulated ion channel...    28   5.8  
At3g24540.1 68416.m03082 protein kinase family protein contains ...    28   5.8  
At3g01320.1 68416.m00045 paired amphipathic helix repeat-contain...    28   5.8  
At5g18570.1 68418.m02195 GTP1/OBG family protein similar to SP|P...    28   7.7  
At1g09830.1 68414.m01105 phosphoribosylamine--glycine ligase (PU...    28   7.7  

>At5g35530.1 68418.m04226 40S ribosomal protein S3 (RPS3C)
          Length = 248

 Score =  340 bits (835), Expect = 7e-94
 Identities = 163/231 (70%), Positives = 185/231 (80%)
 Frame = +3

Query: 54  TIFQRSENLFGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEK 233
           T   +      DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEK
Sbjct: 3   TQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEK 62

Query: 234 GRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGV 413
           GRRIRELTS+VQKRF  P+ SVELYAEKVA RGLCAIAQAESLRYKL+GGLAVRRACYGV
Sbjct: 63  GRRIRELTSLVQKRFKFPQDSVELYAEKVANRGLCAIAQAESLRYKLLGGLAVRRACYGV 122

Query: 414 LRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVL 593
           LRF+MESGA+GCEV+VSGKLR  RAKSMKF DG M+ SG P  +Y++ A RHVLLRQGVL
Sbjct: 123 LRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQGVL 182

Query: 594 GIKVKIMLPWDQQGKNGPXKPQPDHILVTEPKDEPVPLEPTXEVRSLAPAP 746
           G+KVKIML WD +GK GP  P PD +++  PK++ V + P   V   A  P
Sbjct: 183 GLKVKIMLDWDPKGKQGPMTPLPDVVIIHTPKEDDVYIAPAQVVTQAAFVP 233


>At2g31610.1 68415.m03862 40S ribosomal protein S3 (RPS3A)
          Length = 250

 Score =  335 bits (823), Expect = 2e-92
 Identities = 165/235 (70%), Positives = 185/235 (78%), Gaps = 3/235 (1%)
 Frame = +3

Query: 54  TIFQRSENLFGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEK 233
           T   +      DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEK
Sbjct: 3   TQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEK 62

Query: 234 GRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGV 413
           GRRIRELTS+VQKRF  P  SVELYAEKV  RGLCAIAQAESLRYKL+GGLAVRRACYGV
Sbjct: 63  GRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 122

Query: 414 LRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVL 593
           LRF+MESGA+GCEV+VSGKLR  RAKSMKF DG M+ SG P  +Y++ A RHVLLRQGVL
Sbjct: 123 LRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQGVL 182

Query: 594 GIKVKIMLPWDQQGKNGPXKPQPDHILVTEPKDEPV---PLEPTXEVRSLAPAPL 749
           GIKVKIML WD  GK+GP  P PD +++  PKD+ V   P +    V  +  APL
Sbjct: 183 GIKVKIMLDWDPTGKSGPKTPLPDVVIIHAPKDDVVYSAPAQAAAPVTLVQEAPL 237


>At3g53870.1 68416.m05951 40S ribosomal protein S3 (RPS3B) ribosomal
           protein S3a - Xenopus laevis, PIR:R3XL3A
          Length = 249

 Score =  331 bits (814), Expect = 3e-91
 Identities = 162/235 (68%), Positives = 185/235 (78%), Gaps = 3/235 (1%)
 Frame = +3

Query: 54  TIFQRSENLFGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEK 233
           T   +      DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEK
Sbjct: 3   TQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEK 62

Query: 234 GRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGV 413
           GRRIRELTS+VQKRF  P  SVELYAEKV  RGLCAIAQAESLRYKL+GGLAVRRACYGV
Sbjct: 63  GRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 122

Query: 414 LRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVL 593
           LRF+MESGA+GCEV+VSGKLR  RAKSMKF DG M+ SG P  +Y+++A RHVLLRQGVL
Sbjct: 123 LRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDSAVRHVLLRQGVL 182

Query: 594 GIKVKIMLPWDQQGKNGPXKPQPDHILVTEPKDEP---VPLEPTXEVRSLAPAPL 749
           GIKVK+ML WD +G +GP  P PD +++  PK+E     P +       +A APL
Sbjct: 183 GIKVKVMLDWDPKGISGPKTPLPDVVIIHSPKEEEAIYAPAQVAAPAALVADAPL 237


>At2g25150.1 68415.m03008 transferase family protein similar to
           10-deacetylbaccatin III-10-O-acetyl transferase
           [gi:6746554], 2-debenzoyl-7,13-diacetylbaccatin
           III-2-O-benzoyl transferase [gi:11559716] from Taxus
           cuspidata; contains Pfam transferase family domain
           PF00248; contains EST gb:R65039
          Length = 461

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -1

Query: 188 LRADGSDPHFHAGVAVLGQLPSEELIEFRLENPISKQIF 72
           L+   SDP    GV V+ +LP + ++EF+ E    K+++
Sbjct: 418 LKPSKSDPSMEGGVKVIMKLPRDAMVEFKREMATMKKLY 456


>At3g06190.2 68416.m00712 speckle-type POZ protein-related similar
           to SPOP (novel nuclear speckle-type protein)
           (SP:O43791)   [Homo sapiens]; contains Pfam PF00651 :
           BTB/POZ domain; contains Pfam PF00917: MATH domain
          Length = 295

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -1

Query: 257 SQLTDSASFLSEHTLCPGGHNNDLRADGSD 168
           S+L +  + LSEH+L   GH  +L ADG D
Sbjct: 255 SELLEYVARLSEHSLTSSGHRKELFADGCD 284


>At3g06190.1 68416.m00711 speckle-type POZ protein-related similar
           to SPOP (novel nuclear speckle-type protein)
           (SP:O43791)   [Homo sapiens]; contains Pfam PF00651 :
           BTB/POZ domain; contains Pfam PF00917: MATH domain
          Length = 406

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -1

Query: 257 SQLTDSASFLSEHTLCPGGHNNDLRADGSD 168
           S+L +  + LSEH+L   GH  +L ADG D
Sbjct: 366 SELLEYVARLSEHSLTSSGHRKELFADGCD 395


>At3g48010.1 68416.m05234 cyclic nucleotide-regulated ion channel,
           putative (CNGC16) similar to cyclic nucleotide and
           calmodulin-regulated ion channel (cngc6) GI:4581207 from
           [Arabidopsis thaliana]
          Length = 705

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 19/48 (39%), Positives = 24/48 (50%)
 Frame = -1

Query: 356 FGLGDSAKTTSSHLFSIQFYRLLWNVESLLYYGSQLTDSASFLSEHTL 213
           FG   +   TSS  F   FY L W + +L  YG  L  +AS LS  T+
Sbjct: 309 FGDAFTNDVTSSPFFDKYFYCLWWGLRNLSSYGQSL--AASTLSSETI 354


>At4g30360.1 68417.m04314 cyclic nucleotide-regulated ion channel,
           putative (CNGC17) similar to cyclic nucleotide and
           calmodulin-regulated ion channel cngc5 GI:4581205 from
           [Arabidopsis thaliana]
          Length = 720

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -1

Query: 356 FGLGDSAKTTSSHLFSIQFYRLLWNVESLLYYGSQLTDSASFLSEHT 216
           FG   +    SS  F   FY L W ++ L  YG  L+ +  F+ E T
Sbjct: 333 FGNAITKNVVSSQFFERYFYCLWWGLQQLSSYGQNLS-TTMFMGETT 378


>At5g14870.1 68418.m01744 cyclic nucleotide-regulated ion channel,
           putative (CNGC18) similar to cyclic nucleotide and
           calmodulin-regulated ion channel (cngc6) GI:4581207 from
           [Arabidopsis thaliana]
          Length = 706

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
 Frame = -1

Query: 416 ENTIASTTYSETSDKLVS*RFGLGDSAKTT---SSHLFSIQFYRLLWNVESLLYYGSQLT 246
           +N     ++ + +    + +FG+   A TT   ++   S   Y L W + +L  YG  +T
Sbjct: 278 QNVTQVLSHCDATSSTTNFKFGMFAEAFTTQVATTDFVSKYLYCLWWGLRNLSSYGQNIT 337

Query: 245 DSASFLSEHTLC 210
            S  +L E   C
Sbjct: 338 TSV-YLGETLFC 348


>At3g24540.1 68416.m03082 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 509

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
 Frame = +3

Query: 600 KVKIMLPWDQQGKNGPXKPQPDHILVTEPKDEPVPLEPTXEVR-SLAPAPLP 752
           K ++   W Q   +    P P  + V EP     P  P   V  SL+P P P
Sbjct: 24  KTQLKSRWQQITMSSASSPPPPQVFVPEPLFSEPPPPPKAPVNVSLSPPPPP 75


>At3g01320.1 68416.m00045 paired amphipathic helix repeat-containing
            protein low similarity to transcription co-repressor Sin3
            [Xenopus laevis] GI:4960210; contains Pfam profile
            PF02671: Paired amphipathic helix repeat
          Length = 1378

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 21/65 (32%), Positives = 29/65 (44%)
 Frame = -1

Query: 257  SQLTDSASFLSEHTLCPGGHNNDLRADGSDPHFHAGVAVLGQLPSEELIEFRLENPISKQ 78
            SQ  D      EH    G   ++  A+G DPH   G + L  LP  E +   +  P+SK 
Sbjct: 1034 SQDEDREEENGEHDEIDGKAESEGEAEGMDPHLLEGESEL--LPQSERVLLSV-RPLSKH 1090

Query: 77   IFASL 63
            + A L
Sbjct: 1091 VAAVL 1095


>At5g18570.1 68418.m02195 GTP1/OBG family protein similar to
           SP|P20964 Spo0B-associated GTP-binding protein {Bacillus
           subtilis}; contains Pfam profile PF01018: GTP1/OBG
           family
          Length = 681

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
 Frame = +3

Query: 393 RRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDG--LMIHSGDPCNDYVNTATR 566
           RRA         +SG R   VV +G  R  +  + +++D      H  D C   VN + +
Sbjct: 578 RRAAINEFEVFRDSGTRAWHVVGAGLQRFVQMTNWRYMDSDKRFQHVLDACG--VNKSLK 635

Query: 567 HVLLRQGVLGIKVKIMLPWDQQGKNGPXKP 656
           ++ +++G   I  ++ L W     NG  +P
Sbjct: 636 NMGVKEGDTVIVGEMELIW-HDSANGSSRP 664


>At1g09830.1 68414.m01105 phosphoribosylamine--glycine ligase (PUR2)
           Identical to phosphoribosylamine--glycine ligase,
           chloroplast [precursor] SP:P52420 from [Arabidopsis
           thaliana]
          Length = 532

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 435 GARGCEVVVSGKLRGQRAKSMKFVDG 512
           G+ GC+VVV   L G+ A     VDG
Sbjct: 273 GSAGCQVVVEEFLEGEEASFFALVDG 298


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,595,497
Number of Sequences: 28952
Number of extensions: 352493
Number of successful extensions: 981
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)