Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P02_F_J04
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy...   101   9e-23
SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy...    98   1e-21
SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyc...    45   1e-05
SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc...    33   0.062
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ...    29   1.0  
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc...    28   1.8  
SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyc...    27   3.1  
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase...    27   4.1  
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    27   4.1  
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ...    25   9.5  
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb...    25   9.5  

>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score =  101 bits (243), Expect = 9e-23
 Identities = 49/107 (45%), Positives = 67/107 (62%), Gaps = 5/107 (4%)
 Frame = +3

Query: 126 MGAYLSEPVTEKVSSDEANDKLECGASSMQGWRVNQEDAHNTILDFDVNT-----SLFAV 290
           MG  LSEPVTEK S + +N+ +  G SSMQGWR++ EDAH+ IL  + +        FAV
Sbjct: 1   MGQTLSEPVTEKHSVNGSNEFVLYGLSSMQGWRISMEDAHSAILSMECSAVKDPVDFFAV 60

Query: 291 YDGHGGAEVATYCSQNLPNYIKNTDAYKSGDYTKALEDAFLGFDATI 431
           YDGHGG +VA +C  NLP  ++    ++ GD+  AL+ +FL  D  I
Sbjct: 61  YDGHGGDKVAKWCGSNLPQILEKNPDFQKGDFVNALKSSFLNADKAI 107


>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 370

 Score = 98.3 bits (234), Expect = 1e-21
 Identities = 51/105 (48%), Positives = 66/105 (62%), Gaps = 6/105 (5%)
 Frame = +3

Query: 126 MGAYLSEPVTEKVSSDEANDKLECGASSMQGWRVNQEDAHNTILDF-DVN-----TSLFA 287
           MG  LSEPV +K SS   +  L  G S MQGWR++ EDAH  +L+F D N     TS F 
Sbjct: 1   MGQTLSEPVLDKHSSSGGDRWLHFGVSHMQGWRISMEDAHCALLNFTDSNSSNPPTSFFG 60

Query: 288 VYDGHGGAEVATYCSQNLPNYIKNTDAYKSGDYTKALEDAFLGFD 422
           V+DGHGG  VA YC Q+LP+ IK+  ++  G+Y +AL+  FL  D
Sbjct: 61  VFDGHGGDRVAKYCRQHLPDIIKSQPSFWKGNYDEALKSGFLAAD 105


>SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 347

 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +3

Query: 213 QGWRVNQEDAHNTILDFDVNTS--LFAVYDGHGGAEVATYCSQNL 341
           Q WR + ED H  + DF  N      AVYDGH G + + YC +NL
Sbjct: 80  QRWRRSMEDTHICLYDFGGNQDDGFVAVYDGHAGIQASDYCQKNL 124


>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 32.7 bits (71), Expect = 0.062
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 282 FAVYDGHGGAEVATYCSQNLPNYIKNTD 365
           + ++DGHGG E + + S NL   I+N D
Sbjct: 88  YGLFDGHGGTECSEFLSTNLGKIIENQD 115


>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
           Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 879

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 762 KLLD*TVRNLNLMMSILILSHWRHLRHPVHQ 670
           K+LD  +R+    M +L+L+ W HL   VH+
Sbjct: 49  KILDWLLRSRAFTMRLLVLARWVHLSPSVHR 79


>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
           Mis17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 441

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +3

Query: 138 LSEPVTEKVSSDEANDKLECGASSMQGWR-VNQEDAHNTILDFDVNTSLFAVYD 296
           L + +   + S  ++      AS+ Q    V+Q +A++ I D D +TS+F++ D
Sbjct: 31  LDQNLLANLESSTSSSTRSSPASNQQNLEIVSQSEAYHKISDLDDSTSIFSISD 84


>SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 226

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +3

Query: 78  LTYKYLFIV*CELHSTMGAYLSEPVTEKVSSDEANDKLEC 197
           L YK   I+  +  +TMGAY++  VT+K++  +  D + C
Sbjct: 30  LRYKDGVILAADSRTTMGAYIANRVTDKLT--QLTDNIWC 67


>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 444

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
 Frame = +3

Query: 234 EDAHNTILDFDV---NTSLFAVYDGHGGAEVATYCSQNL-PNYIKNTDAYKSGDYTKALE 401
           ED H  ++D ++   N   + ++DGH G   + +  Q+L P  ++      +  Y +   
Sbjct: 98  EDDHVEVIDRNIDEGNWYFWGIFDGHSGWNTSLFLRQHLVPAVVRELQKCTASYYHQNAC 157

Query: 402 DAFLGFDATIA 434
            + L  D +I+
Sbjct: 158 PSSLALDKSIS 168


>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = -3

Query: 729 LMMSILILSHWRHLRHPVHQHSSWHVDMARVA*LCLQVYF 610
           L++S+ + SH+ H+   +HQ +S H  + +     L++Y+
Sbjct: 115 LLVSLDLASHYMHMYSTLHQGASSHKTVTKKHNWMLRLYY 154


>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 266

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +3

Query: 120 STMGAYLSEPVTEKVSSDEANDKLECGASSMQGWRVNQEDAHNTILDF 263
           S + + +S  +  K SSD A        S++    +N+E A N +L F
Sbjct: 186 SELSSVMSSEILPKASSDSAGSFEPPVISNISKELINKEYARNVLLQF 233


>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 570 PPAKVDVLLGTSWLHFHHQILPH 502
           PPA + ++  T W HF   +LPH
Sbjct: 244 PPA-LFLIFATPWYHFIQLVLPH 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,338,848
Number of Sequences: 5004
Number of extensions: 71505
Number of successful extensions: 202
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)